Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1728g00004 ATGAGGATCACTGTAATGACTGCTGATGAACAAATACTTTCGTTGGATGTTGATCCCCATGAATCTGTGGAAAACGTCAAGGCATTGCTTGAGGTAGAAACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTATAATGGAAGGGAGATGAGTAATTCTGAGAAATTGAGTGCTCTCGGTGTTAAAGATGAAGATTTGGTGATGATGGTCTCTGCTGTTTCTTCTGGTGCATCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAATCCTGCTTCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATAGGTCAGCTCTTTCAGAACGATCCAGAGTTGGCACAAGCTATTCTAGGAAGTGATCTTAACAGAATACAGGAGATTCTACGAGCACGTCATCAACAGAGAGCTGAATTACAGCGTCAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCTATTCGTCAGAAAGGAATTGGAAACTGGGCAGCTGCACTAGAACATAATCCCGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAAGCATTTGTTGATAGCGGAGCCCAGTCTACGATTATATCAAAAAGCTGTGCTGAGCGCTGTGGATTCTGGTTTCAATAG 702 0.4274 MRITVMTADEQILSLDVDPHESVENVKALLEVETQVPLQQQQLLYNGREMSNSEKLSALGVKDEDLVMMVSAVSSGASANDLGFNPDGSAVNPASFQQHIRQDSNLIGQLFQNDPELAQAILGSDLNRIQEILRARHQQRAELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDXNWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGFWFQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1728g00004 234 Gene3D Acid Proteases 175 233 IPR021109 -
Pral1728g00004 234 Coils Coil 126 149 - -
Pral1728g00004 234 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Pral1728g00004 234 SMART ubq_7 1 72 IPR000626 GO:0005515
Pral1728g00004 234 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Pral1728g00004 234 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pral1728g00004 234 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 230 - -
Pral1728g00004 234 Pfam Aspartyl protease 174 231 IPR019103 GO:0004190|GO:0006508
Pral1728g00004 234 Gene3D - 1 81 - -
Pral1728g00004 234 SUPERFAMILY Acid proteases 182 229 IPR021109 -
Pral1728g00004 234 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1728g00004 Pral-Chr1728 52930 57142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1728g00004 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 25.974 1.86e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1728g00004 K11885 - tcc:18593206 386.726