Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1727g00003 ATGAACCTTGATAATTCGGGTGAAAGCGAGCCTTCACATAGGTTTGCAAGAGAGATGTCTTATTCCAGAAGATCAAGGTATTCTCGATCGCCTTCTCCATACAAGCGATATGGGAGGTCTATCTCTAGGTCTCTGTCTAGGTCAAGATCTAGGAGTTTTTCAAGGAGCCCATCAAGGGAAGCAGAGAATCCTGGTAACAACTTGTATGTTACTGGCTTGTCTCCTCGGATTACTAAGAGAGAGCTGGAGAAGCATTTTGCAAGTGAGGGAAGAGTGATTGATGTTCATTTAGTTGTTGATCCTTGGACAAGAGAATCACGAGGGTTTGGATTTGTGACAATGGAAAATGTTGAGGAGGCTGATAGATGCATAAAGTATCTGAATCGCTCTGTGCTTGAAGGGCGTGTCATCACAGTAGAGAAGGCTAGAAGGCGAAGAGGTCGAACTCCAACCCCTGGGAGGTATCTCGGGTTGAGGACTGTTCGGGGTCGCCGCCGTTCTTTGAGCTCCTCCCCTCGTCGCTCTCCTAGTTATTCTCCTTACAGAAGAAGCTACAGCCGGTCGCCATATTCTTCAGATCGCAGCAGGAGCCGTTCTTACTCTCCGTATCACAGCCGGCGGAGCAGGAGGAGGTCCCATTCGCCTTATGACCGACACAGATACTATTCTCCATATGACCGACGACGCAGATTGTATTCCCCTTACAGCAGGTCACCTGTGAGGAGGCGTGATAGATCATACTCTCCTTATGACTCACCTGATGATCGCTACTACAGACAGCACCGTTACAGGTCCATTTCCCCAAGTGCCTCCCCAAGGCCAAGGAGGGGCTCTAGGAGGTATTCTCGCAGTGTCTCTCCTGTGAAGAGGAGGAGCTCAAGAAGGAGCTATTCTCGGAGTCTGTCCCCTAGGCCAAGGAGGAGTGCACGAATAAGGGGCTATTCACCAAGTCTTTCCCCAAGACCAAGGAGGAGTTCACGAAGGAGCTATTCTCGCAGCATTTCTCCCAGGCCAAGAGGCAGCAGGAGAGGTGGCTCTTCTAAGCGTTATAGAAGCTACTCAAGAAGTCCGAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCTCTTACTCCCAGATCAGCTTCTCCTTGA 1134 0.4982 MNLDNSGESEPSHRFAREMSYSRRSRYSRSPSPYKRYGRSISRSLSRSRSRSFSRSPSREAENPGNNLYVTGLSPRITKRELEKHFASEGRVIDVHLVVDPWTRESRGFGFVTMENVEEADRCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVRGRRRSLSSSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPYHSRRSRRRSHSPYDRHRYYSPYDRRRRLYSPYSRSPVRRRDRSYSPYDSPDDRYYRQHRYRSISPSASPRPRRGSRRYSRSVSPVKRRSSRRSYSRSLSPRPRRSARIRGYSPSLSPRPRRSSRRSYSRSISPRPRGSRRGGSSKRYRSYSRSPSVSASSRSVSRSLTPRSASP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1727g00003 377 MobiDBLite consensus disorder prediction 1 69 - -
Pral1727g00003 377 MobiDBLite consensus disorder prediction 217 262 - -
Pral1727g00003 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 137 IPR000504 GO:0003723
Pral1727g00003 377 MobiDBLite consensus disorder prediction 276 301 - -
Pral1727g00003 377 MobiDBLite consensus disorder prediction 35 69 - -
Pral1727g00003 377 MobiDBLite consensus disorder prediction 10 24 - -
Pral1727g00003 377 FunFam Serine/arginine-rich splicing factor SR45a 20 150 - -
Pral1727g00003 377 MobiDBLite consensus disorder prediction 143 377 - -
Pral1727g00003 377 SMART rrm1_1 67 140 IPR000504 GO:0003723
Pral1727g00003 377 Gene3D - 3 150 IPR012677 -
Pral1727g00003 377 MobiDBLite consensus disorder prediction 350 377 - -
Pral1727g00003 377 SUPERFAMILY RNA-binding domain, RBD 54 170 IPR035979 GO:0003676
Pral1727g00003 377 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 301 - -
Pral1727g00003 377 MobiDBLite consensus disorder prediction 170 198 - -
Pral1727g00003 377 CDD RRM_SF 68 140 - -
Pral1727g00003 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Pral1727g00003 377 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1727g00003 Pral-Chr1727 18783 22226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1727g00003 67 149 Eukaryotic Initiation Factors Gene Family AT3G16380 33.735 6.66e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1727g00003 - - gmx:100805126 209.534