Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1715g00006 ATGTACATGTTCAAAATGCGCTGCGATTTAGGCAAGAATTGTCAGAATGGGGAAGGTTCATGCTTTCAACATGATACCTTAGAGAAGGCTAATGCTATCAGCATGGAGGCTCCCTCAGATCAAATGAGTAGCAAAACCAAGGAGCTAACTTCCCATAATAACAATACCTCAGACCAGGTGCATACAATCGATCCAGGAACCACACATTCTGAATTGCCAGAAATAACTAATCAGATTGGCTCTGAATCTATGGTTAATGAACAAAGGGCTACTGGCACTAGGGAAACCATGTTTCTTATTGATGAAAAACCACCTCCAGATGGCGTGACTGGGAATATTGTTATTCAACTTCCTGCACAACCTCAATGTGACATAGACAAGAGCTGTCAAACCGAAGAAGGTTCAAGTTTTCAACATAATACTTCAGAACTGGGCAATGCTATTGGCGTGGATGCTTCCTCAGATCACATGAGTAGCAAAACGAGAAAGTCAATGTGCCACCCTCATAATACGTCAGAACAATTGCATATACTTGATCCCAAAACTGCTCTTTTTAAAATGCCTGAGAACACTAATCAGACTGGCTCTGAATCTTTGAACAATGAACAAAGGGTCCTAGGTACTGGGGCAACCAGCTCTCTTCTTGATGGAAAACAACTTACAGTTTCTGACAGTATGACTGGAGATTCTGTCATTCAATTGCAAACACGATCTCAACACGACTTAGACAATAGTTGCCAGAATGGAGGAGCTTCATGCTTTCAACATAATACCTTAAAAGAGGTTTCTGGTTCTTTATCTAATGATGAATCGCAGAACAAATGTCAGCAGGCATCCCAAGATGTTTATAATGAACCTGTGGAAAGAAATGGCGCAAATGAACAATTAGGTCCACCTTCACAAGACGCTGCCAAGGGCAGTAGTCTTAACTCTCTGCAAAGAAACTCCAGAAGAGCAACTCGTGCCCAGTTAGGGTCCAAGGATAAAAGAACTGCAGCATCGTTGAAAAAGAAATATATCCTAAGAAGTAGTGACAGAGTTTTGCGGTCAAGGACGCGTGAAAAACCTAAACCACCCCAATCAAATACTAATCTGGTTAATCTGGATCATAATGGAGAAAATAGAAGAAAAGGCAGGAAGAAGAATAAGCGTAGAGAAAGGAGAGTGACTGATGAATTTTCAAGAATCAGAGCTCGTCTAAGATATTTCTTAAGTCGAGTGAGCTATGAACAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCATGGAAAAATTAAAACCTGAGAAGGAGCTTCAACGTGCTAAGTCTAAAATACTTAGTTTTAAATTGAAAATTAGGGATTTGTTTCGACATTTGGATGCATTGTGTGCTGAAGGGAGGCTTCCACAGTCTTTGTTTGATTCTGAAGGAGAGATTTGCAGTGAGGATATATTTTGTGCAAAATGCAGGTCCAAAGACTTGGCCACTGGCAATGATATAATACTTTGTGATGGTGCTTGCGATCGTGGATTTCATCAGTTCTGTCTGGAACCTCCTTTGTTATCTGAGAATTTTCCACCTGATGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAGGATGACTGTTTTGATCTCCTTAATGATTCTTTCGGAACAAGCCTCTCTATTTGTGATTCCTGGGAGAGGGTTTTTCCAGAGGCAGCCGCAGCTACTGGAAACAAAGTGGATGATAACTTGGGACTTCCATCAGATGATTCTGGTGATGGTGATTATAATCCTGATGTTGCAGAAGATGAGGAGGTTGAAGGAGGCAATTCAAGTTCTGATGAGTCTGATAATGCTTCTGCTTCTGAGAAAATGGAGGCTTCATGTAATGAGGATCCATACGTAGGCCTTCCTTCAAGTGATTCAGAGGACAACGATTATGATCCTAATGCTGTAGATCATGACAAAGGTGCAGCTGAAGAAAGTTCAAGTTCTGATTTCACGTCTGATTCTGAGGACCTTGCTGATGTAGTTAAGGGTAGTGCATTATCTGGACAGGATAATTGTCCTGTACCTGCATCATCTTTGCCAGAGTTAGATCCTGGTGAAGAAAACTCCACTCCTGTCTCTGGGAAAAGACATATTGAAAGGTTGGACTACAAAAAACTGTATGACGAGACCTACCAAAATGCTCCATCTGATACTAGCGATGACGAAGATTGGACTGCTAGACCTGCTTTAAGTAGGAAAAAGAAAGTCACTAGCAATGGGCCGCCAGTGTCACCAAATGGGAAAACCTCAGTACTGGATCATGTGCAGAAAGAAACTGAAAATACTCCTAGGAGAAATACTCGTCAAACTAAAGTTGAAAATATGGACAGTTCAACCAGTAAATCACTTGAAGGCTCTAAAGGGGCTGGTTCAAATGGTAAAAAACGAGGATCTTCAACATACAAAAGACTTGGGGAAGATGCAGTTAAGGTACTCTACAAAAACTTCCAGGAAAATCAGTACCCGGACCGTGCCACTAAAGAAAGCTTGGCAAAAGAACTTGGGCTTACTTTCAACCAGGTTAGCAAATGGTTTGAGAATACTCGTTGGAGCTTTCGGAATTCCCCAAGGATGGAAGCCAGGGCAAGTAAAAGTGCTTCACAGGGTGCCACTTCCAGCAAAGTTGAAAATGAGATAGCACTTGGTGATGAGAAGAGGGACTCAAAATCAGTGTCCCAGGAGGGGAATATACAGAAATCAAAATCCCAAAGCTCTAGAAAGAGGAAGCATAATACCGATACCGAGGAATCTGATGCGAATATAAACATTGATGATGCAGCAACAAAACCTCTTGTTCACTCACCTAGAGTTGGTGAAGCGCAAAGGAACCGCAAAACGAAAACAAGGAAGCGAAAATGA 2892 0.4174 MYMFKMRCDLGKNCQNGEGSCFQHDTLEKANAISMEAPSDQMSSKTKELTSHNNNTSDQVHTIDPGTTHSELPEITNQIGSESMVNEQRATGTRETMFLIDEKPPPDGVTGNIVIQLPAQPQCDIDKSCQTEEGSSFQHNTSELGNAIGVDASSDHMSSKTRKSMCHPHNTSEQLHILDPKTALFKMPENTNQTGSESLNNEQRVLGTGATSSLLDGKQLTVSDSMTGDSVIQLQTRSQHDLDNSCQNGGASCFQHNTLKEVSGSLSNDESQNKCQQASQDVYNEPVERNGANEQLGPPSQDAAKGSSLNSLQRNSRRATRAQLGSKDKRTAASLKKKYILRSSDRVLRSRTREKPKPPQSNTNLVNLDHNGENRRKGRKKNKRRERRVTDEFSRIRARLRYFLSRVSYEQNLIDAYSGEGWKGYSMEKLKPEKELQRAKSKILSFKLKIRDLFRHLDALCAEGRLPQSLFDSEGEICSEDIFCAKCRSKDLATGNDIILCDGACDRGFHQFCLEPPLLSENFPPDDEGWLCPGCDCKDDCFDLLNDSFGTSLSICDSWERVFPEAAAATGNKVDDNLGLPSDDSGDGDYNPDVAEDEEVEGGNSSSDESDNASASEKMEASCNEDPYVGLPSSDSEDNDYDPNAVDHDKGAAEESSSSDFTSDSEDLADVVKGSALSGQDNCPVPASSLPELDPGEENSTPVSGKRHIERLDYKKLYDETYQNAPSDTSDDEDWTARPALSRKKKVTSNGPPVSPNGKTSVLDHVQKETENTPRRNTRQTKVENMDSSTSKSLEGSKGAGSNGKKRGSSTYKRLGEDAVKVLYKNFQENQYPDRATKESLAKELGLTFNQVSKWFENTRWSFRNSPRMEARASKSASQGATSSKVENEIALGDEKRDSKSVSQEGNIQKSKSQSSRKRKHNTDTEESDANINIDDAATKPLVHSPRVGEAQRNRKTKTRKRK 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1715g00006 963 MobiDBLite consensus disorder prediction 37 68 - -
Pral1715g00006 963 CDD PHD_PRHA_like 483 535 IPR045876 -
Pral1715g00006 963 ProSiteProfiles Zinc finger PHD-type profile. 481 538 IPR019787 -
Pral1715g00006 963 CDD homeodomain 814 866 IPR001356 GO:0003677
Pral1715g00006 963 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 544 IPR013083 -
Pral1715g00006 963 ProSitePatterns Zinc finger PHD-type signature. 484 535 IPR019786 -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 748 763 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 858 886 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 701 718 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 589 605 - -
Pral1715g00006 963 Pfam PHD-finger 483 538 IPR019787 -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 641 655 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 764 782 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 321 356 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 294 320 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 858 963 - -
Pral1715g00006 963 ProSiteProfiles 'Homeobox' domain profile. 806 866 IPR001356 GO:0003677
Pral1715g00006 963 Pfam Homeodomain 815 861 IPR001356 GO:0003677
Pral1715g00006 963 MobiDBLite consensus disorder prediction 889 903 - -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 289 389 - -
Pral1715g00006 963 SUPERFAMILY Homeodomain-like 805 868 IPR009057 -
Pral1715g00006 963 MobiDBLite consensus disorder prediction 783 809 - -
Pral1715g00006 963 FunFam Homeobox protein HAT3.1 464 540 - -
Pral1715g00006 963 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 270 947 - -
Pral1715g00006 963 Gene3D - 808 879 - -
Pral1715g00006 963 SMART HOX_1 808 870 IPR001356 GO:0003677
Pral1715g00006 963 MobiDBLite consensus disorder prediction 572 814 - -
Pral1715g00006 963 SMART PHD_3 483 536 IPR001965 -
Pral1715g00006 963 SUPERFAMILY FYVE/PHD zinc finger 473 541 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1715g00006 Pral-Chr1715 40293 46684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1715g00006 282 867 Homeobox Transcription Factor Family AT3G19510 43.730 1.15e-134 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pral1715g00006 PHD 3.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1715g00006 - - pcin:129285574 1477.61