Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1683g00003 ATGGATGAGAAGAGAGGGGAAGGAGAAGAAGAGAGCAGCGAGAGGTGGAAGATGGCAAACTTCGTGGCATTTCCCGACGAGATTCCGACGATGAGTAGTTCAAGTCTGATGAGCTTCCCTCAACCTCCTACTTTCTCATCAAGCATCTCCGACATGATGATGATGACAACGCCTTCATCGGAGAACGATTACAAGCCTAATTACTCCTCCGCCTTCATGGACCTGCTCAATCTGCAAGATTACAGTCCTTCTTTGTTCGATTGCCTCCCTTCCTCCGCCACTCACCACCACCCTCTTCCGTCGCCGGCGAGCTCCAACGTCCCGGAATCCTCCGAGGTCTTGAATACTACTCCGGCCTCCCCCAATTCTTCCTCCATCTCGTCTTCCTCCAATGAAACCCCCCTTGCCGATCACACCATCATCGACCAACCCCACACTAGTGGTAAACAAGAACCTGACGATGAAGAGCACAGGGATGCAGCCAAAGGAGGCGACCTCGATCAACAAAAGACTACGAAACAGCTGAAGCCGAAAAAGAAGAACCAAAAGAAGCAAAGAGAGCCCAGATTTGCGTTCATGACAAAGAGCGAAGTCGACCAACTCGACGATGGCTATAGGTGGCGCAAATATGGCCAAAAGGCTGTCAAAAACAGCCCCTATCCCAGGAGCTATTATCGTTGCACCACCCCTGGTTGCGGCGTGAAGAAGCGGGTGGAGCGGTCGTCGGAGGACTCGTCGATCGTGGTGACGACGTACGAGGGACAGCACACGCACCCGAGTCCGGTGACGACTCGGGCAAGTGTCGGGTTCGGACCCGCGAGGGCTAGTTGTGGCCTGCTCGGTTCGCCACAACAGTATGTGGTGCCACCACAAGCACAGCATCAGCATCAGCATCTAAGTAATCATCTTCAGGAACAAGACCATGTGCAGGCACAGGACGATGCTTTGTTGTATAATAGCGCATCCCCACTACTTCCTTTGAGCATTACCAATCCGACGTCGTCTTCCTCGTCGTTTTCCAGCTTCCGTCATCATCATCGTCTTCTAGGTTTTGGACCATCGTCCACGACGGCGGCTTCTTCTCAAGCTAATTTGTCAAGGGACAATGGCCTGCTTCAGGACATCATTGTGTCAACTCAGATGAGGAAGGAGGAGGAGAAAGAGGAAGTAATAAGAGAAGAATAG 1185 0.5224 MDEKRGEGEEESSERWKMANFVAFPDEIPTMSSSSLMSFPQPPTFSSSISDMMMMTTPSSENDYKPNYSSAFMDLLNLQDYSPSLFDCLPSSATHHHPLPSPASSNVPESSEVLNTTPASPNSSSISSSSNETPLADHTIIDQPHTSGKQEPDDEEHRDAAKGGDLDQQKTTKQLKPKKKNQKKQREPRFAFMTKSEVDQLDDGYRWRKYGQKAVKNSPYPRSYYRCTTPGCGVKKRVERSSEDSSIVVTTYEGQHTHPSPVTTRASVGFGPARASCGLLGSPQQYVVPPQAQHQHQHLSNHLQEQDHVQAQDDALLYNSASPLLPLSITNPTSSSSSFSSFRHHHRLLGFGPSSTTAASSQANLSRDNGLLQDIIVSTQMRKEEEKEEVIREE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1683g00003 394 Gene3D WRKY domain 185 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral1683g00003 394 SMART WRKY_cls 201 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral1683g00003 394 MobiDBLite consensus disorder prediction 95 191 - -
Pral1683g00003 394 MobiDBLite consensus disorder prediction 147 174 - -
Pral1683g00003 394 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 301 IPR044810 GO:0003700
Pral1683g00003 394 SUPERFAMILY WRKY DNA-binding domain 193 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral1683g00003 394 Coils Coil 376 394 - -
Pral1683g00003 394 ProSiteProfiles WRKY domain profile. 196 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral1683g00003 394 MobiDBLite consensus disorder prediction 97 137 - -
Pral1683g00003 394 Pfam WRKY DNA -binding domain 202 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral1683g00003 394 FunFam WRKY transcription factor 57 187 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1683g00003 Pral-Chr1683 9404 11404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1683g00003 11 387 WRKY Transcription Factor Family AT5G49520 42.079 1.51e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pral1683g00003 WRKY 1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1683g00003 - - gsj:114394278 285.419