Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1680g00004 ATGGAGAGAGAGAAAGGCTTAAGGTGGTGGGATTCTGTGTTGCTTGCACTGCTTCTAACATATGGACTTGCGAGCTCCCAAGAGCAGAGCAAGTCCTGTGCTCCGTCTCAGTGCGGCATTATCACAAACATCAGACATCCATTTCGACTACGAGATGACCCGCCCGGCTGCGGTGATCCAATCTATGAGCTAGCCTGTGAAAACAACATAACTCTGCTTCATCTGAATTCAGCAACATACAGAGTGCTGGGAATTGACCACAGCAACTTCACAATCCGACTCGTAGATCCTGGAATTCAGGAGGGAAATTGCTCTTCCCTCCCTCACTATCTCTTATCCTTATCCAATTTCACTGATAGTCATAGCCGTAACCCCTATGACGCTATTTTGACATACAAACAATTTACATTCAAGCACGTAGTGTACCTAAAGTGTAGAGATCCAGTGAGGGACGACGTAGCATACCTGGACACAGCTCCCTGTGTGAAGTGGGAAGGAAAAAGTCATGTTTATGCTGTGGCTGGAGACCTGTCGGCTTACCAGTTAAAATCTCAGTGTCGTGTGAAATCAGTGGCCACCATAGCCTCAGATTGGGAGTCAATAGGAGATCAAAGAAAAAAGTCCTACACTGATATTCACATAGCGCTTTCCTCTGGATTTGAGCTTTCATGGTGGCGACGAGCTTGCATTGATTTTAAATGCCCAAGTGATCGTCATTTATCAAAGTTGCGCATATTGGCAGAAGGACTGGAGGAAGTAGAAAGGAAGGGTATATACCCTCACTACAGTGACACCGATTCTATTCTAACAAATCCAGCAATCAAATTAGGAATACTCACTGCAATAGGTCTTGTGCCATACATGATACTCAGATTTTCAATGGGGGTCCTACTACTATCCATATTGTTGATTTATAAATACCGGAGAAGGCACATGTCAATGTTTGAGAACATTGAAGATTTTATAAGACTTCAAAACCTTATTCCAATAAGGTACTCCTACAAGGAATTAAGAGCAATGACAGAGGGTTTTAAGATTAAGTTAGGCGAAGGAGGCTTTGGAACTGTATACAAAGGGAAGCTAAGAAGTGGATCTTATGTTGCTATTAAAATGTTGGGCAAATCCAAAGCCAATTGCCAAGAATTCATTAGTGAGGTTGCAACCATTGGGAGGATACACCATTTCAATGTGGTTCATCTTGTTGGGTTTTGTGTGGAAGGAACTAAGCGTGCTCTTGTTTATGAATATATGTCGAATGGATCTTTGGATAAATATATTTTTCCCAAGAAAGAAAGCGTCTCCTTGAGTTTTCATCGGATATATGAGATTTCTCTGGGAGTGGCTCGTGGAATACCTTACCTTCACCATGGATGCGATATGCAGATATTGCATTTTGATATTAAGCCCCATAATATTCTTCTTGATGATAATTTTAGTCCAAAAATTTCAGATTTTGGACTGGCAAGATTATATTCTGTTGGTGATAGTATTGTAACTTTAACCGCAGCAAGAGGAACAATAGGGTATATGGCTCCTGAATTATTTTACAAGAATATTGGAGGAGTTTCTCACAAGGCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGCCGAAGAAGGAATTTGAATTCACATGTAGAACATTCAAGCCAACTTTACTTTCCTTTGTGGATTTATGATCACTTTGATGATGATAAAGATATTGGAATGGAAGATTTGACAGAAGAAGAAAAGGATTTAGCAAAGAAAATGTTCATAGTAGCACTCTGGTGTATACAACTAAAACCTGCAGATCGTCCTTCAATGAACAAAGTGATAGAAATGTTAGAAGCAAATGATGAAAATTTTGAAATGCCTCCAAAACCTTCTCTATTTTCCAATGAGACTGTTGTATTGGATGATACACTTGACTCTGACTTAACAAAATCCACTATCCGTTTACGTTCTCATAGTAGTCCAGCTAGTAATAATGATGTGATGATTCATGTTATATGTTTTGCCCACATCCTAAATCTCATCATTCAAGAGGGCTTAAAGGTGGCAAGTGAAGTTGTGCACAAAATTAGAGAAAGCATTAGATATGTAAAGGCATTAGAGACTAGAACAATCAATTTGAAGAGATGTATTGACCAAGTCAGGGGTCTTGACACTTCTAGGGGTGTGGCTTTGAAGTTAGATATTGCAACTAGATGGAATTCCACATATGCTTCAAAGTGTGATTAA 2232 0.3961 MEREKGLRWWDSVLLALLLTYGLASSQEQSKSCAPSQCGIITNIRHPFRLRDDPPGCGDPIYELACENNITLLHLNSATYRVLGIDHSNFTIRLVDPGIQEGNCSSLPHYLLSLSNFTDSHSRNPYDAILTYKQFTFKHVVYLKCRDPVRDDVAYLDTAPCVKWEGKSHVYAVAGDLSAYQLKSQCRVKSVATIASDWESIGDQRKKSYTDIHIALSSGFELSWWRRACIDFKCPSDRHLSKLRILAEGLEEVERKGIYPHYSDTDSILTNPAIKLGILTAIGLVPYMILRFSMGVLLLSILLIYKYRRRHMSMFENIEDFIRLQNLIPIRYSYKELRAMTEGFKIKLGEGGFGTVYKGKLRSGSYVAIKMLGKSKANCQEFISEVATIGRIHHFNVVHLVGFCVEGTKRALVYEYMSNGSLDKYIFPKKESVSLSFHRIYEISLGVARGIPYLHHGCDMQILHFDIKPHNILLDDNFSPKISDFGLARLYSVGDSIVTLTAARGTIGYMAPELFYKNIGGVSHKADVYSFGMLLMEMASRRRNLNSHVEHSSQLYFPLWIYDHFDDDKDIGMEDLTEEEKDLAKKMFIVALWCIQLKPADRPSMNKVIEMLEANDENFEMPPKPSLFSNETVVLDDTLDSDLTKSTIRLRSHSSPASNNDVMIHVICFAHILNLIIQEGLKVASEVVHKIRESIRYVKALETRTINLKRCIDQVRGLDTSRGVALKLDIATRWNSTYASKCD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1680g00004 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Pral1680g00004 743 FunFam PR5-like receptor kinase 417 624 - -
Pral1680g00004 743 SUPERFAMILY Protein kinase-like (PK-like) 327 614 IPR011009 -
Pral1680g00004 743 SUPERFAMILY Ribonuclease H-like 664 739 IPR012337 -
Pral1680g00004 743 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Pral1680g00004 743 ProSiteProfiles Protein kinase domain profile. 342 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1680g00004 743 PANTHER RUST RESISTANCE KINASE LR10-RELATED 313 630 IPR045874 GO:0004672
Pral1680g00004 743 Pfam Protein kinase domain 347 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1680g00004 743 FunFam serine/threonine-protein kinase PBS1-like 312 416 - -
Pral1680g00004 743 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Pral1680g00004 743 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Pral1680g00004 743 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Pral1680g00004 743 SMART serkin_6 342 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1680g00004 Pral-Chr1680 69828 99713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1680g00004 33 647 Receptor kinase-like Gene Family AT1G66910 36.631 7.90e-117 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral1680g00004 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1680g00004 - - pcin:129321062 789.26