Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1667g00007 ATGGATCACGAGATTGATGTCCCTCCCTTCTTTATCTGCCCCGTTTCATTGGAAATCATGAAGGATCCGGTGACCGTGTCCACCGGTATTACCTACGACCGCGAGAGTATTGAGAAATGGCTGTTCTCCGGGAAGAACATGACCTGCCCAGTCACCAAACAACCCCTATCAGACGACACAGGTCTCACCCCCAACCATACCCTTCGCCGATTGATTCAGGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCCACGCCCAAGCCCCCAGTCACCAAGACCCAGATTTCCAAGCTCATCAGAGACGCTTCCCGATCACCTCACTCCCTGACTCGCTGTCTCCGAGAACTCAAATCTATTGCTTCCGACAGCGAAACAAACAGACGCTGCATGGAAGCTTCGGGTGCTGTTGAGTTCTTGGCATCCATTATATCCACAACCTCACCCCAGGCGGAGCCTAACCAAGACGAGGCCTTAGGTATCCTCCACAACCTCCACGTCTCGGAAGCTAGCCTAAAATCTCTCATAACCTTCAGAAATGGAGGGCTAATAGATTCCTTAACCACGGTCATGCAGAAAGGAGTCTACGAGTCACGAGCCTATGCAGTCCTTTTACTGAATTCAATGTTCCAAGTCGCTGATTCTTCACGCCTGTTCAACATAAGATATGAGCTATTCGTTGAATTAGTGCAGATTCTCAAAGATCAAATCTCCCAGCAGGCTACATACGCGACGCTGCAAACACTGATCCAGCTCTGCCCGTGGGGAAGAAACAGGCACAGAGCAGTAAAAGCAGGGTGTGTTTGGGAACTGATAGAACTGCTTCTGGATTGTGAGGAGAGGAAGGTGTGTGAGATGATGCTAGTGGTGTTGGATATGCTGTGTAGTTGTGCTGAGGGAAGAGCAGAGCTGTTGAGGCACGGGGCAGGGCTAGCCGTCGTGTCGAAGAAGATTCTGAGGGTTTCGACTATGGCGGACGAGAGGGCGGTGAGGATTCTGCTGTCTGTTTCCAAGTCCTCGGCGACTGCCAGTGTTGTGCAGGAAATGATACAAGTGGGTGCGATGGGGAAGCTGTGTTTGGTGATGCAAATGGAGAGTGGGAGCAAGACGAAGGAGAAAGCTAGAGAGATTCTCAAACTCCATGCTCTCGCATGCAAGAACTCTGCATGCATGCCCGGCAGTTTGGGTTCATACTTAGCTTGA 1212 0.5116 MDHEIDVPPFFICPVSLEIMKDPVTVSTGITYDRESIEKWLFSGKNMTCPVTKQPLSDDTGLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVTKTQISKLIRDASRSPHSLTRCLRELKSIASDSETNRRCMEASGAVEFLASIISTTSPQAEPNQDEALGILHNLHVSEASLKSLITFRNGGLIDSLTTVMQKGVYESRAYAVLLLNSMFQVADSSRLFNIRYELFVELVQILKDQISQQATYATLQTLIQLCPWGRNRHRAVKAGCVWELIELLLDCEERKVCEMMLVVLDMLCSCAEGRAELLRHGAGLAVVSKKILRVSTMADERAVRILLSVSKSSATASVVQEMIQVGAMGKLCLVMQMESGSKTKEKAREILKLHALACKNSACMPGSLGSYLA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1667g00007 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Pral1667g00007 403 Gene3D - 97 383 IPR011989 -
Pral1667g00007 403 CDD RING-Ubox_PUB 8 60 IPR045210 -
Pral1667g00007 403 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pral1667g00007 403 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Pral1667g00007 403 SUPERFAMILY ARM repeat 107 378 IPR016024 -
Pral1667g00007 403 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pral1667g00007 403 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pral1667g00007 403 SUPERFAMILY RING/U-box 4 83 - -
Pral1667g00007 403 FunFam RING-type E3 ubiquitin transferase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1667g00007 Pral-Chr1667 23974 25269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1667g00007 1 398 U-box Gene Family AT2G35930 56.219 3.37e-166 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1667g00007 - - gmx:100809839 543.888