Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1664g00018 ATGATTGATTCCGTTCTTCTGGCACTCTTCTTGCCCTGCCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGTCTTCTCTGGTACGCCACTACCCACCGCCCTCAAGTCGCGCTGCCGTCGAAGCCCTCGCCGGAGAAGGGCTTGTCGGCATCGCAGCTGGAGAAGATGCCCAGAGTCACCGGGAAGGAACTTTTGATGGGGAGCGAATGCGCCGTGTGCCTCGACGAGATCGAGAACGAGCAACCGGCTCGACTGGTTCCAGGTTGCAACCACGGGTTCCATGTGGAATGCGCCGATACCTGGCTTTCCAGGCACCCTATGTGCCCGGTTTGTAGAGCCAAGCTGGATCCTCAGCTTCTGAATCCCTGCGAAAATCCCTGTTAA 387 0.5788 MIDSVLLALFLPCLGMSAVFMVYMCLLWYATTHRPQVALPSKPSPEKGLSASQLEKMPRVTGKELLMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSRHPMCPVCRAKLDPQLLNPCENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1664g00018 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 122 - -
Pral1664g00018 128 SUPERFAMILY RING/U-box 55 119 - -
Pral1664g00018 128 SMART ring_2 71 112 IPR001841 -
Pral1664g00018 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Pral1664g00018 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Pral1664g00018 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1664g00018 Pral-Chr1664 81550 82837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1664g00018 1 128 C3H Transcription Factor Family AT5G42200 54.412 1.68e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1664g00018 K19037 - gmx:100817919 216.853