Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1660g00001 TTGAACTGGAAGCATGAATTGGATGATATTCCATGGGTCTGGATTGGAGATGAATTTGTCTCACCAAATGCACTTGCATTTGACTCGCCTGTAAAATTCACTCCATATTTATATGTTGTTCCATCTGAACTATCAGAATATAAAGATTTGCTGATAAAACTGGGTGTCAGACTGAGTTTTGGTATTAGGGACTATCTTCATGTATTACAACGGCTGCAGAACGATGTAAAAGGGGTTCCTCTTTCATTAGATCAGTTAAATTTTGTCCATCGTGTCCTTGAAGCCATAGTAGAATGTTGCTCGGAGAAGCCACTTATTGAGCCGTTTGACAGTCCATTGTTGATTCCAGATGCTCATGGACTTCTGATGCCTTCGGGGGATCTTGTTTATAATGATGCACCTTGGCTGGAAAATAATTCTCTCGTTGGAAAACATTTTATACATCCCAGTATCAGCAATGATTTGGCTAGCAGGCTGGGCATACTGTCTATTCGATGCCTTTCTTTAGTCAGTGAAGATATGACCGAAGACATGCCGTGCATGGACTATGATAAAGTAAATGAGCTGTTGGCCTTGTATGGAAATGAGGAGTTTTTGTTGTTTGACCTTCTTGAGTTGGCAGATTGTTGCAAAGCCAAGAAATTGCATCTGATTTATGATAAGAGGGAACATCCCTGCCAGTCTTTGCTGCAACACAACTTAGGGGAATTCCAAGGGCCTGCTCTTGTAGCAATCTTTGAAGGAGCCTGCTTGAGCAGAGATGAAATTAGTAACCTCCAGCTCCTTCCTCCATGGAGAATACGGGGCAACACACATTATGGTTTAGGGTTGGTTTGTTGCTATTCCATATGCGTCCTCCTCTCAATCATATCTGGTGGCTACTTTTACATGTTTGATCCTCGTGGTTTGTCACTTGCTGCACCTTCGACATCTCTCCCTTCAGCTAAAATGTTTTCCTTAATAGGTACTGACCTCACACGACGATTTAGTGATCAGTTTAGTCCAATGCTCATCAATGAGAATGAATTATGGTCATCATCAGATTCTACCATCATCCGAATGCCTCTATCATCTGAATGTCTGAAGAATGGATCCAACCTGGGATCAAACAGGTTAAGGCAAATCATTGACAAATTTATAGAGCATGGATCAAGAGCACTTCTTCTTTTGAAGTCAGTTTTGCAGGTATCAATACTGACATGGGAAGATGGAAGTTCACGTCCATGCCAGAATTATTCAGTTTGCATTGACTCATCATCTGCTCTTATGAGAAATCCTTTTTCTGAAAATAAATGGAGGAAGTTCCAAATATCACGATTATTTAGCAGCTCTAATGCTGCTATTAAGATGCATATAATAGATGTGACTTCATATTCTGAAGGAGTTACAACCATCGATCGGTGGCTTCTTGTACTCTGCCTGGGTTCTGGACAAACAAGAAATATGGCTCTTGATAGGCGATATCTTGCCTATAACTTGACTCCTGTTGCTGGAATTGCTGCACTTATATCAAGAAATGGCCATCACTCCAATCCTTTCTCCTTGAGCTCCATTATGTCTCCTCTTCCTTTGTCTGGTTGTATAAACATGCCTGTTACGGTCCTAGGGTGTTTCCTTGTATGTCACAACAGAGGTCGTTTCCTCTTTAAGTATCAAGACAGGGAAACATTAGCTGATGTACATGTCGATGCTGGAAATCAGTTGGTTGAATCTTGGAACAGAGAGCTGATGTCCTGTGTTTGTGACTCCTACGTTGAGATGGTTTTAGAAATGCAGAAGTTAAGAAAAGATGTTCCGAGTTCTTTTATTGACTCCAGTGCCTATCCTGCAATCAATCTCTCTATGAAGGCTTATGGAGATCAGATCTATTCCTTCTGGCCATGTTCTAAGGCTGGTGTTCTGAGTGATCAACCTAGTGATTGCAGCACGACTCCTGCAAGTTCAGCAGCCATTCTCAAAGCAGATTGGGAATGCCTTAAAGAACGGGTGATGCATCCGTTTTATTCCCGTATTGTTGACCTTCCAGTATGGCAACTATATTCAGGAAATTTAGTCAAGGCTGAAGAAGGTATGTTCCTTTCACAACCTGGGAATGGGATGATTGGTAGTATACTTCCGGCTACAGTTTGTAGCTTTGTAAAAGAGCATTATCCTGTATTTTCAGTACCATGGGAATTGGTAAATGAAATCCAAGCTGTGGGTTTTCCTGTTCGTGAAATTAGACCTAAAATGGTTCGTGATCTCCTAAAAATTACTTCAACATCAATTGTATTACGGTCAGTTGACATGTATATAGATGTTCTTGAATACTGCTTGTCAGATTCTCTGCAAACCGATGATGTCACAATCGGTTCCAGACAAACTGATGTCAGAAGCAGTTCTCATCCAGAGTCTAATATGCCTAACTCCTTTAGCTCTGCCACCCAAGGTGCAGCCAGCTCAGGAGATGCACTTGAAATGATGACAAGTTTAGGGAAGGCTTTATTTGATTTTGGGCGGGGTGTTGTTGAAGATATTGGTAGAGCAGGAGGACCCCTGGTTCACAAGAACGCTGTGACAGGAGACGGTCAAAATAGGGACCAGAAAATTATATCCATTGTTACAGAGCTCAAAGGTTTACCATGTCCAACTGCTACTAACCATCTGATAAAATTGGGCTTTACTGAACTTTGGGTTGGGAATAAGGAGCAGCAATCATTGATGGTTCCCTTGGGAGCAAAGTTTATGCATCCTAAACTATTAGACAAACCAATATTCGGCGAACTTTTCTCTAATCTCACTATCCAGGCACTTCTGAAGTTACAGAATTTCTCTCTTCACCTTCTGGCCCATCATATGAAGCTAATTTTCCACAAAGATTGGGTGAATCATGTAACAGGATCAAATATGGTTCCATGGCTTTCATGGAAGAAACTACCATGTTCTGTGGATCAAGGCGGTCCTTCCCCTGAATGGATTAGAACATTCTGGAAAACTTTAAGTGGTTCACAAGAAGATTTATCTCTTTTTTCAAGTTGGCCCTTAATTCCTGCCTTTCTCGGTAGGCCAGTTTTATGCCGGGTAAGGGAGCGACAACTGGTCTTCATTCCACCCTTGGAACATCCACCATTGACAAGTGGTGTTTTAGAAAGAGAAGCAGCCGTCAGTTATCTGGGTGAAGCATCTGATGGTAATACTGTTGAAGCTCAGTTAATTGAATCCTACACTTCTGCTTTTGAAAGATCCAAAACTAGGTATCCTTGGTTATTTCCTTGGTTAAACCAGTGTAATATACCCATATTTGACGTAGCATTCATGGACTGTGCTGCTTCATGCAATTGTTTTCCTATGCCTGGTCAATCACTTGGCCAAGTTATTGCATCCAAACTCGTGGCAGTTAAGCAAGCTGGATATCTCTCTGAACCTACTAATCTTTCCACTTCATGTTGTGATGATCTTTTTTCCCTTTTTTCTAGTGAGTTCTCAAATGGTTCCAGCTTTACTCGAGAAGAAATTGAGGTTTTACGTTCTCTGCCTATATATAAAACAGTTGTTGGATCTTATACTAAGTTGCAGGGTCAAGATCAATGTATAATCCCTTCACATTCGTTTCTTAAACCATATGATGAGCATTGTCTTGCTTATGCCACAGATTCAATTGAAAGTTCATTTCTTCTAGCCCTTGGGGTGCTGGAGTTGCATGACAAACAGATCTTAGTACGCTTTGGCTTGCCTGGCTTTGACAGGAAACCTCAAAATGAGCAGGAGAGCATATTGTTACATCTTTATACGAATTGGCATGATCTTCAAGCCAATCAGTCAGTTGTTGAAACTTTAATGGAAACTAAATTTGTGCAAAATTCAGATGAATTTTCAACAGATCTCCTAAAACCCAAAGACCTTTTTGATCCTGGTGATGCTCTGTTGATCTCTATTTTCTCTGGTGAGAGAACGAAATTTCCAGGAGAAAGGTTTAGTACAGATGGGTGGCTTCGAATATTAAGGAAACTTGGCCTTCGAACTGCTATTGAAGTAGATGTAATACTTGATTGTGCTAGAAGAGTTGAGTTTCTTGGAAATGAGTGCTTGAAATCAAGTGATATGGATGATTTTGAATCAGACTCGAGCAATACAAATAAGGAAGTTTCAAGGGAAGTCTGGATGCTGGCAGGATCTGTTATTGAATTTATTTCCTCAAACTTTGCTCGCTATTTTAGCAACAACTTCTGTGACATTCTTGGCAGGATTGCATGTGTACCTGCTGAGCTGGGGTTTCCAAGTGTCCATTGCAAGAGGGTACTTGCTTCATATAGTGAAGCTATTTTGTCTAAAGATTGGCCTCTTGCTTGGAGTTGTGCTCCCATTCTTTCTAGACCACAGATTGTTCTTCCAGAGTATTCTTGGGGAGCTCTCCATTTAAGGAGTCCTCCGCCCTTTTCCATGGTTTTAAAGCACCTGAAGGAAATTGGGAAAAATGGAGGTGAAGATACCCTAGCTCACTGGCCCATTGCATCAGGAATGAACATTGAGCAATGTACTTGTCAGATCTTGAAATATCTAGAGAAACTTTGGGGTTCCCTTTCTTCCTCAGATCTATTGGAGCTACAGAAAGTGGCATTTCTGCCTGTTGCAAATGGAACACGCCTGGTGACTGCTAGTGCTCTTTTTGTGCGTTTGATTATCAATTTATCTCCATTTGCTTTTGAGCTCCCTACAGTATATCTACCATTTGTGAAGATTTTAAAAGATTTGGGTCTTCAGGAGACACTGACCCTTTCTTCTGCAATGGATCTTCTCCTAAATCTTCAGAAAGCTTGTGGATATCAGCATTTAAATCCAAATGAGCTACGGGCTGTGATGGAAATTTTGAATTTTATATGTGATCAGATTATTGAGGGAAACACACTCGATAGGTCTAACTGGAAATCTGAAGCCATAGTTCCTGATGATGGCTGCAGGCTTGTTCATTCAACATCATGTGTCTATATTGATTCCTGTGGTTCTCGATACATCAAATGTATTGATATTTCCAAGATAAGATTTGTCCACCCAGACCTCTCTGAGCAAGTATGTAGTGTGCTGGGCATTAAAAAGTTGTCCGAAGTTGTTCTAGAGGAACTTGATGAGAATGAGCAGTTGCAGACTTTAGATTCTGTGGGGTGCGTTTCACTAGTGACTATCAAACAGAAATTATCAAGCACTTCGCTTCAGGTTGCTGTATGGACCATTGTTAACAGCATGGGCTGTTACATTCCTGCGGTTAACAACTTAGCTTTGGATACAATACAATCCTTACTCAAATCAACTGCAGAAAATCTGCAATTTGTTGCAAATCTTAAAACGAGGTTTTTGCTCTTGCCCAAGTTAGTTGATATTACTCGTGTTGGTAAAGACTTTATCATACCAGACTGGAAGGGTGAATCTGTACATCAGACTCTTTATTTTGTGAAAAAATCAAAAACCCGTATTCTAATTGCAGAACCACCAGCTTATGTATCGATTTTTGATCTCATTGCCATTGTTGTCAGCCAGGTTTTAGGCTCTCCTACTGTATTGCCTATTGGACCTTTATTTGTTTGTCCTGAAGGATCTGAGATTTCAGTTGTTAATGCTTTAAACCTGTGCTTTGACAAGAAAGAAGTTGAATCCGGAAGGGGAAGCAGTAATTTGGTGGGAAAAGAAATATTGCCTCAAGATGCTCGTCTTATTCAGTTCCATCCGTTGAGGCCTTTTTATTCAGGTGAAATAGTGGCTTGGCGTTCTCAAAATGGAGAGAAGCTAAAATATGGCAAAGTTCCTGAGGATGTCAGACCATCAGCAGGCCAAGCTTTATACAGATTTAAGATTGAAATTGCTCCAGGCGTTACCCAAGTTCTACTTTCTTCTCAAGTTTTTTCATTTAAAAGTATAGCAGCAAGCAGTCCTCTGTCAGAAACCTTGGTAGGTGATAGCCTTGTAGTAAGCAGTAACAGGCCTCATGTTGAGGTTTCAGAGAGTGCGCAAAGGGGCAGAAGCATCTCTCAGCCAACGAGAGAAGTCCAGCATGGCAAAGTTTCAGCCGTAGAACTGGTGCAGGCGGTTAATGAGATACTCTCTGCTGCTGGAATGAATATTGATGTGGAGAAGCAGGCTTTACTTCAGAGAACAATAGCTTTGCAAGAAAATCTCAGAGAATCTCAAGCAGCACTCCTATTGGAGCAGGAAAGGGTTGAAGCGGCGACAAAAGAGGCTGATACAGCAAAGGCAGCATGGCTGTGTCGGGTTTGTCTGACTGCTGAAGTTAATATCACAATAGTGCCTTGCGGTCATGTGCTTTGTCATAGATGCTGTTCTGCAGTATCAAAGTGTCCATTTTGTAGGCTCCAGGTTACTAAAACCATTCGAATTTTCCGACCATAG 6378 0.4108 LNWKHELDDIPWVWIGDEFVSPNALAFDSPVKFTPYLYVVPSELSEYKDLLIKLGVRLSFGIRDYLHVLQRLQNDVKGVPLSLDQLNFVHRVLEAIVECCSEKPLIEPFDSPLLIPDAHGLLMPSGDLVYNDAPWLENNSLVGKHFIHPSISNDLASRLGILSIRCLSLVSEDMTEDMPCMDYDKVNELLALYGNEEFLLFDLLELADCCKAKKLHLIYDKREHPCQSLLQHNLGEFQGPALVAIFEGACLSRDEISNLQLLPPWRIRGNTLXYGLGLVCCYSICVLLSIISGGYFYMFDPRGLSLAAPSTSLPSAKMFSLIGTDLTRRFSDQFSPMLINENELWSSSDSTIIRMPLSSECLKNGSNLGSNRLRQIIDKFIEHGSRALLLLKSVLQVSILTWEDGSSRPCQNYSVCIDSSSALMRNPFSENKWRKFQISRLFSSSNAAIKMHIIDVTSYSEGVTTIDRWLLVLCLGSGQTRNMALDRRYLAYNLTPVAGIAALISRNGHHSNPFSLSSIMSPLPLSGCINMPVTVLGCFLVCHNRGRFLFKYQDRETLADVHVDAGNQLVESWNRELMSCVCDSYVEMVLEMQKLRKDVPSSFIDSSAYPAINLSMKAYGDQIYSFWPCSKAGVLSDQPSDCSTTPASSAAILKADWECLKERVMHPFYSRIVDLPVWQLYSGNLVKAEEGMFLSQPGNGMIGSILPATVCSFVKEHYPVFSVPWELVNEIQAVGFPVREIRPKMVRDLLKITSTSIVLRSVDMYIDVLEYCLSDSLQTDDVTIGSRQTDVRSSSHPESNMPNSFSSATQGAASSGDALEMMTSLGKALFDFGRGVVEDIGRAGGPLVHKNAVTGDGQNRDQKIISIVTELKGLPCPTATNHLIKLGFTELWVGNKEQQSLMVPLGAKFMHPKLLDKPIFGELFSNLTIQALLKLQNFSLHLLAHHMKLIFHKDWVNHVTGSNMVPWLSWKKLPCSVDQGGPSPEWIRTFWKTLSGSQEDLSLFSSWPLIPAFLGRPVLCRVRERQLVFIPPLEHPPLTSGVLEREAAVSYLGEASDGNTVEAQLIESYTSAFERSKTRYPWLFPWLNQCNIPIFDVAFMDCAASCNCFPMPGQSLGQVIASKLVAVKQAGYLSEPTNLSTSCCDDLFSLFSSEFSNGSSFTREEIEVLRSLPIYKTVVGSYTKLQGQDQCIIPSHSFLKPYDEHCLAYATDSIESSFLLALGVLELHDKQILVRFGLPGFDRKPQNEQESILLHLYTNWHDLQANQSVVETLMETKFVQNSDEFSTDLLKPKDLFDPGDALLISIFSGERTKFPGERFSTDGWLRILRKLGLRTAIEVDVILDCARRVEFLGNECLKSSDMDDFESDSSNTNKEVSREVWMLAGSVIEFISSNFARYFSNNFCDILGRIACVPAELGFPSVHCKRVLASYSEAILSKDWPLAWSCAPILSRPQIVLPEYSWGALHLRSPPPFSMVLKHLKEIGKNGGEDTLAHWPIASGMNIEQCTCQILKYLEKLWGSLSSSDLLELQKVAFLPVANGTRLVTASALFVRLIINLSPFAFELPTVYLPFVKILKDLGLQETLTLSSAMDLLLNLQKACGYQHLNPNELRAVMEILNFICDQIIEGNTLDRSNWKSEAIVPDDGCRLVHSTSCVYIDSCGSRYIKCIDISKIRFVHPDLSEQVCSVLGIKKLSEVVLEELDENEQLQTLDSVGCVSLVTIKQKLSSTSLQVAVWTIVNSMGCYIPAVNNLALDTIQSLLKSTAENLQFVANLKTRFLLLPKLVDITRVGKDFIIPDWKGESVHQTLYFVKKSKTRILIAEPPAYVSIFDLIAIVVSQVLGSPTVLPIGPLFVCPEGSEISVVNALNLCFDKKEVESGRGSSNLVGKEILPQDARLIQFHPLRPFYSGEIVAWRSQNGEKLKYGKVPEDVRPSAGQALYRFKIEIAPGVTQVLLSSQVFSFKSIAASSPLSETLVGDSLVVSSNRPHVEVSESAQRGRSISQPTREVQHGKVSAVELVQAVNEILSAAGMNIDVEKQALLQRTIALQENLRESQAALLLEQERVEAATKEADTAKAAWLCRVCLTAEVNITIVPCGHVLCHRCCSAVSKCPFCRLQVTKTIRIFRP 2126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1660g00001 2126 Pfam Zinc finger, C3HC4 type (RING finger) 2079 2119 - -
Pral1660g00001 2126 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN 4 2116 - -
Pral1660g00001 2126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2056 2125 IPR013083 -
Pral1660g00001 2126 MobiDBLite consensus disorder prediction 784 811 - -
Pral1660g00001 2126 SUPERFAMILY RING/U-box 2078 2121 - -
Pral1660g00001 2126 Coils Coil 2050 2070 - -
Pral1660g00001 2126 Coils Coil 1690 1710 - -
Pral1660g00001 2126 ProSiteProfiles Zinc finger RING-type profile. 2080 2114 IPR001841 -
Pral1660g00001 2126 SMART ring_2 2080 2113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1660g00001 Pral-Chr1660 10 12388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1660g00001 2036 2124 C3H Transcription Factor Family AT1G73950 31.111 4.95e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1660g00001 K17592 - gmx:100789980 3303.84