Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1653g00003 ATGTGTAACGTCGCCTGCAATAGTGAAGATGTATATAACAAACACCTATCCGGGAAAAAGCATGCTGCTCAGATTAGCTTGATGTCTGATAATGGTATTGGTTCTTATCTTGCCGCGTTTAAGCATCTTGGCATTGGTCCTTGGAAAAAAGGCCCAAAGAAAATTTCTACCCAACCTGCATGGTGCGAACTTTGCAAGATCAGTTGCAACAGCAGGGATGTATATATGACACACTTAGCTGGGAGGAAACACCTGAGGAACCTGGGGTTGCTCTCAAAATCAAATAATGCTTTGCAGCGTGCAACCAATCCTGTTGTTAGGCCCCAGGAAAGGCCAAACACTTGTGAAGATGAAGGGATAAATTCACATAAGCCAAATAAAGCAGCCATGGTTGAGGATATTGAGGCAAAGAAACGTAAACTTATAAAAGGTGGGGCAGCAGAAACTGATATTAGAATATGCACTCTATGTAATGTGGTGTGCAACAGCCAAACGGTGTTCAATTTTCACCTTGCTGGGCAGAAGCATGCTGTAATGGTGAAGCTGATGATGCAGAAGCAGCCAGGATTGCTTGCAGAAATGTCAAATAATTTCAGAAGTGACACCGATACTTCTTTTAACGCGGAGGAACTCTTGAAAATTAAAACAAGATGTAGAGAGCTTAGAAAAGAGAAGGACATGATAAATTGTTCACAATCCCAAATTTTTGAGCTACTCCGGATAATAGAACTACATGAGAAGTCATTATTAGAGACTAGCATAAAAGATAAGACACACATACAGAGGTTGGAAGAAGAGCTATTGAACTGCTCTCAGGAAATAGATTACCTTAAGGATCAGCTTAATGGAAGGAACATGGAGGTCAAATACCTGCAAGAGCTTGTTTACAGCTTTAAACTGAAAATAAAGGATATGGAAGGCTTACAAGATGAGGTTATCAGGTTAAAAGAGGAGCTGCAGAGATCCAGTTCTGAACAATTTTTCTTGTTGAAGGAATTAGTGACTAAAGAAATGGAATTGGAGAAGTCAACACTGTCCGTAGAGAAATTGAAGGAATCAATTTCATCCATGGCATTAGAGTCTGAATGTGAGGTAGAGTGCATGAAACTTGACATGATGGCCTTGGAGCAGAGTCACTTTGAGGCTAAGAAAATACAGGAGGAAACTCTGGAGGAAAACACTAGAATGAGTAGATTGATTGGAGAGCTTCAATTTAAATTTCAGGAAGCCCAAAAAAATATTGTCTCTCTGAATGAGGAAAATAAGAAACTTAACAATAAGATTGATGCTGTCAATGTGAACACCGGAAATTTTTCTCAGAAGGTTGAAGAGTGGCTAGAAAAGAAGGACAGATCACAACTCAATGGTCAGTCTTCCTTGAGCGAACAAGAGAAGGGTTCAGACATATCAAAGGATATAAGTGTTTATGGAGAAGTATTGGGTCCACTCCTTGGGAGGCTATCTTTGGCGTTGGAAACAGATGCAGATATTAAAGAGGAGATGCAGAAGATGTCACATCAGATGCAAAAGTATAAAACACTTGTGGAGAAACTTAAGGAAGAATTAAGAGAAGAAAAGTTGAAGGCCAAAGAAGAAGCAGAGGACCTTGCTCAAGAAATGGCAGAGCTTAGATATCAAGTTACAGGTTTGTTAGAAGAAGAACGTAAGCATCGTGCTCGCATTGAACAGGCATCCTTGCAAAGAATTGCCGAGTTAGAAGCACAGCTTCAAAGAGAACAGAGAAAATCTTTATTTGCTGTCCGCGGTCTCCCTGAAGTGTAG 1782 0.4024 MCNVACNSEDVYNKHLSGKKHAAQISLMSDNGIGSYLAAFKHLGIGPWKKGPKKISTQPAWCELCKISCNSRDVYMTHLAGRKHLRNLGLLSKSNNALQRATNPVVRPQERPNTCEDEGINSHKPNKAAMVEDIEAKKRKLIKGGAAETDIRICTLCNVVCNSQTVFNFHLAGQKHAVMVKLMMQKQPGLLAEMSNNFRSDTDTSFNAEELLKIKTRCRELRKEKDMINCSQSQIFELLRIIELHEKSLLETSIKDKTHIQRLEEELLNCSQEIDYLKDQLNGRNMEVKYLQELVYSFKLKIKDMEGLQDEVIRLKEELQRSSSEQFFLLKELVTKEMELEKSTLSVEKLKESISSMALESECEVECMKLDMMALEQSHFEAKKIQEETLEENTRMSRLIGELQFKFQEAQKNIVSLNEENKKLNNKIDAVNVNTGNFSQKVEEWLEKKDRSQLNGQSSLSEQEKGSDISKDISVYGEVLGPLLGRLSLALETDADIKEEMQKMSHQMQKYKTLVEKLKEELREEKLKAKEEAEDLAQEMAELRYQVTGLLEEERKHRARIEQASLQRIAELEAQLQREQRKSLFAVRGLPEV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1653g00003 593 Coils Coil 260 280 - -
Pral1653g00003 593 SUPERFAMILY beta-beta-alpha zinc fingers 150 186 IPR036236 -
Pral1653g00003 593 Coils Coil 501 553 - -
Pral1653g00003 593 Coils Coil 400 434 - -
Pral1653g00003 593 Coils Coil 562 582 - -
Pral1653g00003 593 SMART ZnF_U1_5 57 91 IPR003604 GO:0003676|GO:0008270
Pral1653g00003 593 SMART ZnF_U1_5 1 28 IPR003604 GO:0003676|GO:0008270
Pral1653g00003 593 SMART ZnF_U1_5 149 183 IPR003604 GO:0003676|GO:0008270
Pral1653g00003 593 Coils Coil 305 325 - -
Pral1653g00003 593 Gene3D Classic Zinc Finger 49 90 - -
Pral1653g00003 593 Gene3D Classic Zinc Finger 1 27 - -
Pral1653g00003 593 Gene3D Classic Zinc Finger 135 185 - -
Pral1653g00003 593 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 194 592 - -
Pral1653g00003 593 SUPERFAMILY beta-beta-alpha zinc fingers 48 89 IPR036236 -
Pral1653g00003 593 Pfam Zinc-finger of C2H2 type 61 84 - -
Pral1653g00003 593 Pfam Zinc-finger of C2H2 type 2 21 - -
Pral1653g00003 593 Pfam Zinc-finger of C2H2 type 154 176 - -
Pral1653g00003 593 SUPERFAMILY beta-beta-alpha zinc fingers 1 27 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1653g00003 Pral-Chr1653 25709 32667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1653g00003 1 203 C2H2 Transcription Factor Family AT5G61190 25.359 3.93e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1653g00003 - - qsa:O6P43_002003 436.802