Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1648g00003 ATGGTCCCAAAATTACCCCATACAGAACTGAAACCCTCTCTCAAACAGTGGAAGCTCAGTTTGAGGAAGAAGATGAAGGGAGGAGACGGGAGTGGGTACAAGAAGGGGCTGTGGACGGAGGAAGAAGACAGAGTTTTGATGGAATACATTAGGGTTCATGGAAGACGCCACTGGAACCGCATTTCCAAAGTCACTGGTTTAATGAGGAGTGGGAAGAGCTGCAGATTAAGGTGGCTGAACTATCTCAGCCCAAACGTCAAACATGGAAGTTTCTCTGAAGAAGAAGACGATCTCATCATTCGCCTTCACAATCTCCTTGGAAACAGGTGGTCTCTAATTGCAGGCAGGGTACCTGGAAGAACAGACAACCAAGTAAAAAATCATTGGAACACTCATTTGTGCAAGAAACTTGGTATCACTAGGCCGACAAAAAAACCCATTAAGGACAAAGTATCTTTTGAACCTAAGGCTTCACAGTCAAAAGAGACCCAAAATGTTCACATATCTTCCAATTCTATGCCTATTATTCCTCTCACTCTCAATAATAAATCCAAAGAAACTGAGATAAAAGAGCAAGGAAGCTATGTCAACAACCATCCCATGGCAAGTATCGAAGAAGCACAACATTATTGGCTACCTGCAGAAAATGATCACTTTGACCAAACTTTTATGTTTGGTCATGATCATGCTTTTGTCCTACATAGTCCTCCTAGCTTGATGGAATTCTTTGATGAATTCGATATAATTTAG 750 0.4173 MVPKLPHTELKPSLKQWKLSLRKKMKGGDGSGYKKGLWTEEEDRVLMEYIRVHGRRHWNRISKVTGLMRSGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGITRPTKKPIKDKVSFEPKASQSKETQNVHISSNSMPIIPLTLNNKSKETEIKEQGSYVNNHPMASIEEAQHYWLPAENDHFDQTFMFGHDHAFVLHSPPSLMEFFDEFDII 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1648g00003 249 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 31 187 - -
Pral1648g00003 249 CDD SANT 90 133 IPR001005 -
Pral1648g00003 249 Gene3D - 35 87 - -
Pral1648g00003 249 CDD SANT 38 82 IPR001005 -
Pral1648g00003 249 Gene3D - 89 170 - -
Pral1648g00003 249 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Pral1648g00003 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Pral1648g00003 249 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Pral1648g00003 249 FunFam Myb transcription factor 35 87 - -
Pral1648g00003 249 Pfam Myb-like DNA-binding domain 89 133 IPR001005 -
Pral1648g00003 249 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Pral1648g00003 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 82 IPR017930 -
Pral1648g00003 249 SMART sant 34 84 IPR001005 -
Pral1648g00003 249 SMART sant 87 135 IPR001005 -
Pral1648g00003 249 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1648g00003 Pral-Chr1648 23826 25920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1648g00003 33 139 MYB Transcription Factor Family AT5G40330 76.636 1.41e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1648g00003 Myb_DNA-binding 6.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1648g00003 K09422 - csin:114277501 225.328