Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1646g00012 ATGGCTTTCGACATTTGGAAATTGTTTTCTTCCATTGTCTCCATAATACATGTTATTTCTTTGGTTTGCTTCCCTAACATCCCAAGTTGTATGTGGTTGAGTCGTCCTACTCCTGTTAGCCAGATTCTGACATTCGAGGGAACGCATTGTGAAACAGAAACCATGGCCTTAGATTTGCAATATGAGGATTTTGCAGCGCAAACTGATGCCTTTGGAGATAAATCTTGTGTGGAAAAGTGGAATTCTGCCCCTGAAGCCATTGCAGACTCTGATAGGGATGCTCCTGGTGACTTCGAATGCAATATCTGCCTGGATTCCTTGCATGATCCAGTATTAACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAGGTGGCTCCATTTTGGTAATGTTTCTTCTCAAAACATAGTTCAGGAAAGGACATTCTGCCCAGTATGCAAATCAGAAATCTCTCAATTCTCCCTCGTTCCCGTATATGGATGTGTCCAAATCACAAAACCTTCCAAGGGTAAGTCTCCCAATGTAGGGACTGCCATACCTCCAAGACCTCGCGGTCCCGTGTCAGTTCATGACTTTGCAAGATCATGTAACAGCATAGCTGCAGCTCATGACTCGTCAAGATCATATAATACCGCAAGTGCTTCCCGGCCAGCTACGCAATTTCATCAACGCCCTTATGCTTATCACACTCAACAGTTGAATGCATTTGACACAACACATGGAGTTTTTGGTCAGATGATACATGCGAGAGTCTTTGGTAATCAGTTGACAAACGTGTACACTTCTAATTCATATGGTCTCACGGGGAACAACAATCGGAGGGTGAGAAGGCATTTGATGCTAGTGGATAAATCACTCAGCAGAATCTGTTTTTTCATCTTCTGCTGCACAGCTGTGTGTCTTCTCTTATTCTGA 921 0.4376 MAFDIWKLFSSIVSIIHVISLVCFPNIPSCMWLSRPTPVSQILTFEGTHCETETMALDLQYEDFAAQTDAFGDKSCVEKWNSAPEAIADSDRDAPGDFECNICLDSLHDPVLTLCGHLYCWPCIYRWLHFGNVSSQNIVQERTFCPVCKSEISQFSLVPVYGCVQITKPSKGKSPNVGTAIPPRPRGPVSVHDFARSCNSIAAAHDSSRSYNTASASRPATQFHQRPYAYHTQQLNAFDTTHGVFGQMIHARVFGNQLTNVYTSNSYGLTGNNNRRVRRHLMLVDKSLSRICFFIFCCTAVCLLLF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1646g00012 306 Pfam Zinc finger, C3HC4 type (RING finger) 100 148 IPR018957 GO:0046872
Pral1646g00012 306 ProSiteProfiles Zinc finger RING-type profile. 100 149 IPR001841 -
Pral1646g00012 306 SUPERFAMILY RING/U-box 93 162 - -
Pral1646g00012 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 176 IPR013083 -
Pral1646g00012 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 68 304 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral1646g00012 306 SMART ring_2 100 148 IPR001841 -
Pral1646g00012 306 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1646g00012 Pral-Chr1646 42739 45336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1646g00012 93 306 C3H Transcription Factor Family AT4G28270 35.616 3.53e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1646g00012 K10666 - cave:132182471 268.855