Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1646g00010 ATGCCACGTCAGGATATGTTTATCCGTGTGCGCGTCATTTTCGTTATATATAAAGCTCCGTCCTTTCCCTCTTTCCACTCGTCCTCTGCATTTCTCATTTCTTTCTTTTCGTTCTGCTCACTGCATTTCGTGCTTTCTGGGTTCTGGCCTCTCTTCCTCGCCCCTTCTTTCCAACTGCTGCTTCGGCCATCAAGTCCTTCACTGTTTCTTTTTATTCTGACATTCGAGGGAACGCATTGTGAAACAGAAACCATGGCCTTAGATTTGCAATATGAGGATTTTGCAGCGCAAACTGATGCCTTTGGAGATAAATCTTGTGTGGAAAAGTGGAATTCTGCCCCTGAAGCCATTGCAGACTCTGATAGGGATGCTCCTGGTGACTTCGAATGCAATATCTGCCTGGATTCCTTGCATGATCCAGTATTAACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAGGTGGCTCCATTTTGGTAATGTTTCTTCTCAAAACATAGTTCAGGAAAGGACATTCTGCCCAGTATGCAAATCAGAAATCTCTCAATTCTCCCTCGTTCCCGTATATGGATGTGTCCAAATCACAAAACCTTCCAAGGGTAAGTCTCCCAATGTAGGGACTGCCATACCTCCAAGACCTCGCGGTCCCGTGTCAGTTCATGACTTTGCAAGATCATGTAACAGCATAGCTGCAGCTCATGACTCGTCAAGATCATATAATACCGCAAGTGCTTCCCGGCCAGCTACGCAATTTCATCAACGCCCTTATGCTTATCACACTCAACAGTTGAATGCATTTGACACAACACATGGAGTTTTTGGTCAGATGATACATGCGAGAGTCTTTGGTAATCAGTTGACAAACGTGTACACTTCTAATTCATATGGTCTCACGGGGAACAACAATCGGAGGGTGAGAAGGCATTTGATGCTAGTGGATAAATCACTCAGCAGAATCTGTTTTTTCATCTTCTGCTGCACAGCTGTGTGTCTTCTCTTATTCTGA 1011 0.4481 MPRQDMFIRVRVIFVIYKAPSFPSFHSSSAFLISFFSFCSLHFVLSGFWPLFLAPSFQLLLRPSSPSLFLFILTFEGTHCETETMALDLQYEDFAAQTDAFGDKSCVEKWNSAPEAIADSDRDAPGDFECNICLDSLHDPVLTLCGHLYCWPCIYRWLHFGNVSSQNIVQERTFCPVCKSEISQFSLVPVYGCVQITKPSKGKSPNVGTAIPPRPRGPVSVHDFARSCNSIAAAHDSSRSYNTASASRPATQFHQRPYAYHTQQLNAFDTTHGVFGQMIHARVFGNQLTNVYTSNSYGLTGNNNRRVRRHLMLVDKSLSRICFFIFCCTAVCLLLF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1646g00010 336 SUPERFAMILY RING/U-box 123 192 - -
Pral1646g00010 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 98 334 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral1646g00010 336 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Pral1646g00010 336 Pfam Zinc finger, C3HC4 type (RING finger) 129 160 - -
Pral1646g00010 336 SMART ring_2 130 178 IPR001841 -
Pral1646g00010 336 ProSiteProfiles Zinc finger RING-type profile. 130 179 IPR001841 -
Pral1646g00010 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1646g00010 Pral-Chr1646 42735 45357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1646g00010 123 336 C3H Transcription Factor Family AT4G28270 35.616 1.02e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1646g00010 K10666 - cave:132182471 268.855