Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1646g00001 ATGGCCACGGCGAGTAACAGTGGCAAATCCACCGTGGGTGGTGGAGAAAGCCGAGATTGGGAGATTGGCAGGGGTAAAGATGTAGACTTGAGCGGTGAGAGGCGGCAATGGAAGCCAGTTTTTGAGGATGCTTCCGTGTCGAACAGGCCTCTGAAGAAAAGCCGAAGCCCCCAACGTGAAAACTCAAACCAAAATCAATCCTCCGTTCCCATTCTACCACATCCTCCTTCGTCTTCGAGAATCGTCTTCCCTTTTGCCTTCGATGGTTCTCAACAGCCTCTGCAATTTCCCTATCAACAATTTGGCTCTCCCAATTTGCCTGCGTTTCGCCCACAGTTTCTCGGGACGCAAAATCAGCAGCAGATGATTTCTTTTGGGTCTCAACAGCCAAACATGGGGTACCCACAGTTCTTAGGCCAAGACTCTGGAGTCGCACACCAGCAACATCATCATCAGCAACAGCAGCAACATCTTCAGTATTGCAGAGACCCGTTGAATCTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACAGCGTAGGGCCGGACGGAAGGCCATTGTACAGGCCCCCTCCTCAGCCTATAAATACTACGAAGCTCTACAGAGGGGTGAGGCAACGTCATTGGGGAAAATGGGTCGCTGAGATTCGTCTTCCTCGCAACAGGACTCGCCTCTGGCTGGGAACATTCGACACAGCTGAAGATGCCGCCTTGGCTTATGATCGCGAGGCCTTTAAGTTGAGAGGAGAGAATGCTAGGCTCAATTTCCCCGAGCTTTTCCTCAATAAGGACAAGCCATCCTCAACAGTCCCAGATTCATCTGCTTCTTCTCCCTCCACTCGTCAACAAGGTTCAACGTCGAAGCAAATTAACTCTGCTCCAGAAGGTTTTACTGCGGAAGCTCCGATTGCAGAGGAGAAGCCTTCGCGACCGCCACCGGAAGAGAGCACCGACAATGATTCTGGAATAGGGTCAAGTGAAGCTACAATGAGCGACGAAGTACAGGCTGCGTCTAATGCTGGAACAGGGGAGGGAACTTCGGCGTCGCAAGAACTGGTCTGGGGAGAAATGGCGGCTTGGTTCAATGCAATTCCAGCGGGTTGGGGTCCCGGTAGCCCTGTGTGGGATGATTTGGACACATTTCAGTCGCAACTTGCCTTTTTCAATCCCAATCACCAAGAATCTAATAATGCAGATACTCACATGCAGCAAGAAGATATTACAGGACCATCAGATTCTTCCACTTCCTCCTCTTGTCCCGTGAAACCCTTCTTCTGGAAAGTGAATGTGCGGTAG 1299 0.5089 MATASNSGKSTVGGGESRDWEIGRGKDVDLSGERRQWKPVFEDASVSNRPLKKSRSPQRENSNQNQSSVPILPHPPSSSRIVFPFAFDGSQQPLQFPYQQFGSPNLPAFRPQFLGTQNQQQMISFGSQQPNMGYPQFLGQDSGVAHQQHHHQQQQQHLQYCRDPLNLSPRGRMMMMMMNSVGPDGRPLYRPPPQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKPSSTVPDSSASSPSTRQQGSTSKQINSAPEGFTAEAPIAEEKPSRPPPEESTDNDSGIGSSEATMSDEVQAASNAGTGEGTSASQELVWGEMAAWFNAIPAGWGPGSPVWDDLDTFQSQLAFFNPNHQESNNADTHMQQEDITGPSDSSTSSSCPVKPFFWKVNVR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1646g00001 432 SMART rav1_2 201 264 IPR001471 GO:0003700|GO:0006355
Pral1646g00001 432 SUPERFAMILY DNA-binding domain 201 259 IPR016177 GO:0003677
Pral1646g00001 432 ProSiteProfiles AP2/ERF domain profile. 201 258 IPR001471 GO:0003700|GO:0006355
Pral1646g00001 432 Gene3D AP2/ERF domain 201 259 IPR036955 GO:0003700|GO:0006355
Pral1646g00001 432 MobiDBLite consensus disorder prediction 263 327 - -
Pral1646g00001 432 CDD AP2 200 260 IPR001471 GO:0003700|GO:0006355
Pral1646g00001 432 Pfam AP2 domain 202 250 IPR001471 GO:0003700|GO:0006355
Pral1646g00001 432 MobiDBLite consensus disorder prediction 19 40 - -
Pral1646g00001 432 MobiDBLite consensus disorder prediction 267 295 - -
Pral1646g00001 432 MobiDBLite consensus disorder prediction 1 75 - -
Pral1646g00001 432 MobiDBLite consensus disorder prediction 392 420 - -
Pral1646g00001 432 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 379 - -
Pral1646g00001 432 PRINTS Ethylene responsive element binding protein signature 224 240 IPR001471 GO:0003700|GO:0006355
Pral1646g00001 432 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700|GO:0006355
Pral1646g00001 432 FunFam Ethylene-responsive transcription factor 2 200 259 - -
Pral1646g00001 432 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1646g00001 Pral-Chr1646 5703 7665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1646g00001 1 378 AP2-EREBP Transcription Factor Family AT2G20880 40.874 5.15e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1646g00001 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1646g00001 - - qsa:O6P43_028790 501.516