Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1643g00004 ATGAGGCTTTCTATGATCGGTCAAGGAACATACAGCAGTGTCTTCCGAGCGCGAGAACTTGAGACGGGGAAGATAGTAGCTCTGAAGAAGGTGCGGTTTGACAACTTTGAGCCGGAAAGCGTTCGGTTCATGGCTCGAGAAATTATGATTCTTAGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCAAAATTGTCCTGTAGCATATACCTTGTATTCGAGTATATGGAACATGACATTACGGGGCTCTTATCTTCCCCTGATATCAAGTTTAGTGAACCGCAGATTAAGTGCTACATGAAGCAGTTGTTATCTGGACTTGACCATTGTCATTCACGGGGTGTAATGCACCGTGACATCAAGGGATCTAATCTTCTAGTGAATAATGAAGGGATCCTAAAGGTGGCTGATTTTGGACTGGCGAACTTCTCAAATGCTGGGCACAGACAGCCCCTTACTAGCCGTGTAGTTACATTGTGGTACCGTCCTCCTGAACTTTTACTAGGTTCAACTGACTATGGTCCTTCTGTGGATCTCTGGAGCATCGGATGTGTGTTTGCTGAACTACTTGTTGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTTAAGCTTTGTGGCTCTCCACCTGAAGAATACTGGAAAAAGTCTAGACTCCCTCATGCAACGTTGTTTAGGCCACAGCAACCGTATAATAGTTGTCTCAGAGAGACTTTTAAAGATTTGCCTTCAACTAGTGTGAACTTGCTACAGACTCTTCTTTCCATCGAACCATACAAACGTGGAACTGCCTCTTCTGCTCTCTCATCACAGTATTTCAAAACAAAGCCGTATGCTTGTGAACCATCAAGCTTGCCGGTATACCCACCTAGCAAGGAGATTGATGTGAAACAGCGGGAGGAGTCAAGGAGGAAAAAGATTGGTGGAAGAGCGCGTGGACCTGAAACGAGAAAACCATCAAGGAAGCCACTAGGATTCAACAAATTAGTCCCAACAGAGGATTTAGCAAGTCAAACCCAGAAGTTCCAAAGGGTAAATGGCAGGTCAGTCCACATCCTCAAGGAAGGGAGCACCAATGTAAGTAAGGAGGAAATAAAGCCATCTAGTGGCGAACCAGATGATGCTTCCCATACGAAAAATGCATCTCAAGGAGATATTCCCTTTTCTGGGCCTTTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGACGTAAAGATGACATTTCAATAAGATCCCACTGCCGATCTATTTCAAGGGGGCATATTGTCAATCCATTGGAGTCTGCTGTACCAAATTCGGTGAATAACTTTGATTCCAGAAACATGGAAAATAAGGATTGTCTGGGACGCTCCAACTCTCGGAATCATGATCCATTTGAAATCCCCAAGCTTGCCATGCAAAATCAATGGAGCAAGTTTGATCGCCCAGATTCTTTTGATGCTTCTGACGAATACCACTCGCAGGAGCTATCTATGGCACTTTACCATAGAGAGGATTCAGTATCCAAGAGAAGTAACCTGAGTTATCAGGACCAAGGAGAGAAGGTTGAGTTTTCAGGACCGCTGCTATCTCAAATGCATACTGTTGATGAGCTCTTGGAAAAACATGAACGCCACATCCGCCGAACAGTCCGAAAAACCTGGTTTCAAAGAGGTAAGAAGCAAGGGAAGCAAGTATAA 1719 0.4421 MRLSMIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNAGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSRLPHATLFRPQQPYNSCLRETFKDLPSTSVNLLQTLLSIEPYKRGTASSALSSQYFKTKPYACEPSSLPVYPPSKEIDVKQREESRRKKIGGRARGPETRKPSRKPLGFNKLVPTEDLASQTQKFQRVNGRSVHILKEGSTNVSKEEIKPSSGEPDDASHTKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDISIRSHCRSISRGHIVNPLESAVPNSVNNFDSRNMENKDCLGRSNSRNHDPFEIPKLAMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSVSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRKTWFQRGKKQGKQV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1643g00004 572 FunFam probable serine/threonine-protein kinase At1g54610 83 323 - -
Pral1643g00004 572 PANTHER CELL DIVISION PROTEIN KINASE 3 288 - -
Pral1643g00004 572 CDD STKc_CDK9_like 2 284 - -
Pral1643g00004 572 MobiDBLite consensus disorder prediction 298 403 - -
Pral1643g00004 572 MobiDBLite consensus disorder prediction 368 384 - -
Pral1643g00004 572 Pfam Protein kinase domain 3 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1643g00004 572 MobiDBLite consensus disorder prediction 304 333 - -
Pral1643g00004 572 FunFam probable serine/threonine-protein kinase At1g54610 1 82 - -
Pral1643g00004 572 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1643g00004 572 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Pral1643g00004 572 MobiDBLite consensus disorder prediction 385 403 - -
Pral1643g00004 572 ProSitePatterns Protein kinases ATP-binding region signature. 6 29 IPR017441 GO:0005524
Pral1643g00004 572 Gene3D Transferase(Phosphotransferase) domain 1 83 323 - -
Pral1643g00004 572 SUPERFAMILY Protein kinase-like (PK-like) 3 289 IPR011009 -
Pral1643g00004 572 SMART serkin_6 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1643g00004 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Pral1643g00004 572 MobiDBLite consensus disorder prediction 343 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1643g00004 Pral-Chr1643 71866 77294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1643g00004 2 316 Core Cell Cycle Gene Families AT5G10270 50.453 2.94e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pral1643g00004 Pkinase 3.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1643g00004 - - gmx:100803328 978.778