Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1643g00003 ATGGGTTGTGTGAATGCGAAGCAGGCGGTGTCGGTGACGCCTGCTATTGACCACTCCGGCGTGTTTCGTGGCAATGCTGGTACGGGTAATTCGGGAAGGAATTTAGGTGAGTCAGACAAGAAGAAGAAGAGCGAGTCAGTGGGGCTGAGTAGAAGCGAGGTGGGTGAGTCGGGAAGGGCGAGTTCAAATGGAGGTTGTGAGTCGTATAGTTTCAGATTGGGGAATCTGCAAAAGTATGTAGAAGGAGAGCAAGTAGCTGCGGGTTGGCCGGGTTGGCTTACCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTGCCCCTCCGAGCTGATGCGTTTGAGAAACTTGAGAAGATCGGTCAAGGAACATACAGCAGTGTCTTCCGAGCGCGAGAACTTGAGACGGGGAAGATAGTAGCTCTGAAGAAGGTGCGGTTTGACAACTTTGAGCCGGAAAGCGTTCGGTTCATGGCTCGAGAAATTATGATTCTTAGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCAAAATTGTCCTGTAGCATATACCTTGTATTCGAGTATATGGAACATGACATTACGGGGCTCTTATCTTCCCCTGATATCAAGTTTAGTGAACCGCAGATTAAGTGCTACATGAAGCAGTTGTTATCTGGACTTGACCATTGTCATTCACGGGGTGTAATGCACCGTGACATCAAGGGATCTAATCTTCTAGTGAATAATGAAGGGATCCTAAAGGTGGCTGATTTTGGACTGGCGAACTTCTCAAATGCTGGGCACAGACAGCCCCTTACTAGCCGTGTAGTTACATTGTGGTACCGTCCTCCTGAACTTTTACTAGGTTCAACTGACTATGGTCCTTCTGTGGATCTCTGGAGCATCGGATGTGTGTTTGCTGAACTACTTGTTGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTTAAGCTTTGTGGCTCTCCACCTGAAGAATACTGGAAAAAGTCTAGACTCCCTCATGCAACGTTGTTTAGGCCACAGCAACCGTATAATAGTTGTCTCAGAGAGACTTTTAAAGATTTGCCTTCAACTAGTGTGAACTTGCTACAGACTCTTCTTTCCATCGAACCATACAAACGTGGAACTGCCTCTTCTGCTCTCTCATCACAGTATTTCAAAACAAAGCCGTATGCTTGTGAACCATCAAGCTTGCCGGTATACCCACCTAGCAAGGAGATTGATGTGAAACAGCGGGAGGAGTCAAGGAGGAAAAAGATTGGTGGAAGAGCGCGTGGACCTGAAACGAGAAAACCATCAAGGAAGCCACTAGGATTCAACAAATTAGTCCCAACAGAGGATTTAGCAAGTCAAACCCAGAAGTTCCAAAGGGTAAATGGCAGGTCAGTCCACATCCTCAAGGAAGGGAGCACCAATGTAAGTAAGGAGGAAATAAAGCCATCTAGTGGCGAACCAGATGATGCTTCCCATACGAAAAATGCATCTCAAGGAGATATTCCCTTTTCTGGGCCTTTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGACGTAAAGATGACATTTCAATAAGATCCCACTGCCGATCTATTTCAAGGGGGCATATTGTCAATCCATTGGAGTCTGCTGTACCAAATTCGGTGAATAACTTTGATTCCAGAAACATGGAAAATAAGGATTGTCTGGGACGCTCCAACTCTCGGAATCATGATCCATTTGAAATCCCCAAGCTTGCCATGCAAAATCAATGGAGCAAGTTTGATCGCCCAGATTCTTTTGATGCTTCTGACGAATACCACTCGCAGGAGCTATCTATGGCACTTTACCATAGAGAGGATTCAGTATCCAAGAGAAGTAACCTGAGTTATCAGGACCAAGGAGAGAAGGTTGAGTTTTCAGGACCGCTGCTATCTCAAATGCATACTGTTGATGAGCTCTTGGAAAAACATGAACGCCACATCCGCCGAACAGTCCGAAAAACCTGGTTTCAAAGAGGTAAGAAGCAAGGGAAGCAAGTATAA 2055 0.4599 MGCVNAKQAVSVTPAIDHSGVFRGNAGTGNSGRNLGESDKKKKSESVGLSRSEVGESGRASSNGGCESYSFRLGNLQKYVEGEQVAAGWPGWLTAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNAGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSRLPHATLFRPQQPYNSCLRETFKDLPSTSVNLLQTLLSIEPYKRGTASSALSSQYFKTKPYACEPSSLPVYPPSKEIDVKQREESRRKKIGGRARGPETRKPSRKPLGFNKLVPTEDLASQTQKFQRVNGRSVHILKEGSTNVSKEEIKPSSGEPDDASHTKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDISIRSHCRSISRGHIVNPLESAVPNSVNNFDSRNMENKDCLGRSNSRNHDPFEIPKLAMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSVSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRKTWFQRGKKQGKQV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1643g00003 684 CDD STKc_CDK9_like 112 396 - -
Pral1643g00003 684 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Pral1643g00003 684 MobiDBLite consensus disorder prediction 410 515 - -
Pral1643g00003 684 MobiDBLite consensus disorder prediction 480 496 - -
Pral1643g00003 684 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Pral1643g00003 684 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1643g00003 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Pral1643g00003 684 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1643g00003 684 MobiDBLite consensus disorder prediction 416 445 - -
Pral1643g00003 684 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
Pral1643g00003 684 Gene3D Transferase(Phosphotransferase) domain 1 195 435 - -
Pral1643g00003 684 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Pral1643g00003 684 MobiDBLite consensus disorder prediction 35 49 - -
Pral1643g00003 684 MobiDBLite consensus disorder prediction 497 515 - -
Pral1643g00003 684 FunFam probable serine/threonine-protein kinase At1g54610 195 435 - -
Pral1643g00003 684 SUPERFAMILY Protein kinase-like (PK-like) 106 401 IPR011009 -
Pral1643g00003 684 MobiDBLite consensus disorder prediction 20 64 - -
Pral1643g00003 684 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1643g00003 684 MobiDBLite consensus disorder prediction 455 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1643g00003 Pral-Chr1643 71866 78135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1643g00003 104 456 Core Cell Cycle Gene Families AT5G10270 48.509 1.09e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pral1643g00003 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1643g00003 - - gmx:100803328 1137.87