LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1641g00011	ATGGTTGATTCTCCAAAGCTATTCCTTCTTCTCTGCACTATTTTTTTCCTCTCAGGCGTTTCCTTCGCTGATCCACCGTATAAAAATTGTTCAACAAGTAGTAATTACACCAAAGGAAGCTCCTTTCAGAACAACCTTAACTACATCCTCGGTTCTCTATCCTCCAATGCTTCAATCTCCAAATCTTACAATGTCTCTTATGGAGAGAACCCAGTCAGAGTTTATACCCTCTTCATGTGCCTTGACTATGTTCCAAATCAAACATGCCAAGACTGCATAGCCACGGCAACACAAGACATTCTTAAACTCTGTCCCCAAGCAGAAGAAGCAGTTGTTTGGGAAGAGTACTGCCAATTACGATATTCCAGCAAGAACTTCGTCGGAAAAGTGGATGTCACAGGCAAATTGGGATTTGATAATCAACAGAACATCTCAAAACCCAAGGAGTTTGAGTCTGAGGTCAATGGGTTATTGTATAGTCTTACTGAGAAGGTATCTTTCAATGCTTCTTCTAACTTGTATGCTGTTGGAGAGGCACCCTTTGAAGGGAAAACAATACATGGCTTAGTTCAATGCACCAGAGATTTATCAGCAAGTGATTGTGGCACATGCTTGAAAAGTGCGATAAGTTATCTACCTATTTGTTGTTATTCCTCAATCGGGGCTAGAGTTCTAAGTCGTAGCTGCTACTTAAGATTTGAATTATATGCATTTTATAATGGTGAACCTGATCCAAATGGTTCATTTGCAACAAGGGGAAAAAGTACAACAAACAAAGCAGGGATGATTATAGGAATTATAGCAGCGACTGGCTTGGCAATAGCGATTTTAAGTTTCTGCGTTTACTTCCTTAGAAAGAAGAAGAAAACTCAGAAAAGGAAGGGTGGAATAGACAGTCATGTGATGGATCCTCATAGCTTTGGGCAGAGAGGTGAAACTGTGTTCCAAAATCACCAGAATTTTCGTAGAAGAAATGACAAGATAGCTGAGGATTTGCCTTATTTTGATCTTGAAACTCTGTGTGTTGCTACCAAAAACTTTTCTGATTCAAATAAGCTTGGTCAAGGCGGCTTTGGCCCTGTTTACAAGGGCGTATTAAGTGATGGCCAGGAAGTAGCAATCAAGAGGCTTTCAACGGGCTCTGAACAGGGCTCAGATGAATTCATAAACGAGGTTCTGCTCATACTGAAACTCCAGCACAAAAATCTAGTGAGGCTTCTAGGATTTTGTTTAGATGGAGAAGAAATGCTTCTTGTTTATGAGTTTCTGCCTAATGGCGGCCTTGATGCAGTCCTTTTCGATCCAAGGCAACGAGCACGACTAAGTTGGATCAAACGTATTGATATAATAAGTGGAATAGCAAGAGGGATTCTTTATCTTCATGAAGATTCTCGATTAAAGATAATTCATAGAGATCTAAAAGCAAGTAATATATTATTAGACCGCGAAATGAACCCAAAAATATCAGATTTTGGAATGGCAAGAATATTTGCAGGAGCTGAAGGTGAAGCTAATACTGCTACTATAGTTGGCACATATGGATACATGGCTCCCGAATATGCTATGGAGGGAATATATTCTATAAAATCTGATGTCTTTGGTTTTGGAGTGTTATTGCTTGAAATTATCACCGGGAGGCGCAACGCAGGTTTCCATCACTCTAAACATGCTCCTAGCCTTTTGGCATATGCATGGCATCTATGGAATGAGGGAAGCGCACTGGAGTTGATGGACCCTCTAGTAGCTGATTCATGCCCTGAAGATCAGTTTCTAGTATACTTGCATGTTGGATTACTGTGTGTTCAAGAAGATGCGTATGACAGACCAACCATGTCTTCGGTTGTTTTAATGTTGAAAAGCCAATCACCAACTCTTGGTCAACCCCAAAAGCCACCCTTCTGTGTGGGAAGAATCATTGATAATGATCATCACGTGCCAGAAAATGAACATTGCTCTGTCAATAACTTGACAATCTCTGATATACTGCCCCAGTGA	1995	0.405	MVDSPKLFLLLCTIFFLSGVSFADPPYKNCSTSSNYTKGSSFQNNLNYILGSLSSNASISKSYNVSYGENPVRVYTLFMCLDYVPNQTCQDCIATATQDILKLCPQAEEAVVWEEYCQLRYSSKNFVGKVDVTGKLGFDNQQNISKPKEFESEVNGLLYSLTEKVSFNASSNLYAVGEAPFEGKTIHGLVQCTRDLSASDCGTCLKSAISYLPICCYSSIGARVLSRSCYLRFELYAFYNGEPDPNGSFATRGKSTTNKAGMIIGIIAATGLAIAILSFCVYFLRKKKKTQKRKGGIDSHVMDPHSFGQRGETVFQNHQNFRRRNDKIAEDLPYFDLETLCVATKNFSDSNKLGQGGFGPVYKGVLSDGQEVAIKRLSTGSEQGSDEFINEVLLILKLQHKNLVRLLGFCLDGEEMLLVYEFLPNGGLDAVLFDPRQRARLSWIKRIDIISGIARGILYLHEDSRLKIIHRDLKASNILLDREMNPKISDFGMARIFAGAEGEANTATIVGTYGYMAPEYAMEGIYSIKSDVFGFGVLLLEIITGRRNAGFHHSKHAPSLLAYAWHLWNEGSALELMDPLVADSCPEDQFLVYLHVGLLCVQEDAYDRPTMSSVVLMLKSQSPTLGQPQKPPFCVGRIIDNDHHVPENEHCSVNNLTISDILPQ	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1641g00011	664	ProSiteProfiles	Gnk2-homologous domain profile.	24	126	IPR002902	-
	Pral1641g00011	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Pral1641g00011	664	Gene3D	-	136	238	IPR038408	-
	Pral1641g00011	664	Gene3D	-	25	126	IPR038408	-
	Pral1641g00011	664	SMART	serkin_6	347	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1641g00011	664	CDD	STKc_IRAK	353	619	-	-
	Pral1641g00011	664	FunFam	Cysteine-rich receptor-like protein kinase 28	26	125	-	-
	Pral1641g00011	664	ProSiteProfiles	Protein kinase domain profile.	347	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1641g00011	664	FunFam	Liguleless narrow1	423	626	-	-
	Pral1641g00011	664	Pfam	Protein tyrosine and serine/threonine kinase	350	615	IPR001245	GO:0004672\|GO:0006468
	Pral1641g00011	664	ProSiteProfiles	Gnk2-homologous domain profile.	132	238	IPR002902	-
	Pral1641g00011	664	Gene3D	Transferase(Phosphotransferase) domain 1	423	628	-	-
	Pral1641g00011	664	FunFam	Cysteine-rich receptor-like protein kinase 10	135	238	-	-
	Pral1641g00011	664	Gene3D	Phosphorylase Kinase; domain 1	310	422	-	-
	Pral1641g00011	664	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	29	659	-	-
	Pral1641g00011	664	Pfam	Salt stress response/antifungal	142	236	IPR002902	-
	Pral1641g00011	664	Pfam	Salt stress response/antifungal	30	123	IPR002902	-
	Pral1641g00011	664	FunFam	Cysteine-rich receptor-like protein kinase 10	318	422	-	-
	Pral1641g00011	664	SUPERFAMILY	Protein kinase-like (PK-like)	331	646	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1641g00011	Pral-Chr1641	88394	91147	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1641g00011	7	641	Receptor kinase-like Gene Family	AT4G05200	42.443	2.47e-168	496

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral1641g00011		PK_Tyr_Ser-Thr	5.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1641g00011	-		-	pcin:129293128	1124.77