Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1632g00004 ATGCTGAATTTAGGAGATCCGATATCAACACATCTGGAACTGAAAGCCAGTTATATAGAAGGAGAATTTAATCAAAATATCTCCAAAGGCTTTGATGGATCTTTCATTGCTAACAGTTCAACATCTGAAACAAAGGAAACCTCCGTACCTGAAATTAGTACTTCAAGTACAGGGCATGAGACACAGCAAAAAGAAATGGAATTAGTGGAACCACTTTGTGATGCAATGGTTTCTCTGCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACGTGGTCAAAGGGTTCATGTAGCAACACACCTTTCTCTAGATGATGGTATGGAATATAACGACCCGTTGAATTTTAGTATTGAGCTTGAGAGACTACAAAAGGAAATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTTTTCGTACTGCTGAAGAGGGTAAGTATGAGAAGGAAGAACAACGTGGTCAAAAGGCATGTGAGGCTATTCAATTTTCTGTGGATCAGGGTATGAATAATGAAGAATCAAATTCAACTGTAAAGCATGAGAAACAAAAAAAGGAAATGGACTCAGCAAAACCAGCTTGTGCTGCAATGGTTTCTCTTCCTACTACCAAAGAGGGTAAGCTTGACAAGGAAGAACAACACGGTCAAAAGGCTTCTGAAGCAATGCATGTTTCTGTGGATCAGGCTATGAATAGTGAAGCATTGATTTCAAGTATAAATCCCAATAGACAACAAAAGGAAATGGAACTGGTGAAACCTGTTTCTGCTGCAATTATTTCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAACAACAGGGACAAAGGGTTCCTGAAGCAATGCAATTTTCTATGGATGAGGGTGTGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAGCAAAAGGAAATGAACTCATCAAAACCAGTTTGTGCTGCAATTGTTTCTCTTCCTACTACCAAAGAGGGTGAGCTTGAGAAGAAAGTACAAGATGGTCAGAAGGTTCCTGAAGCAATGCACATATCTGTAGATCATGGCATGGATATTGAATCATTGATTTTAACAACAAAGCCTAAAAGCCAACATAATCCAATGGAATTGGCGAAACCTGGCTGTGCTGCAATCGTTTCCCTTCCTGATATTGAAGAGGATGAACTTGAGAAGGAAGAACATAATTGTAGTGATGGTTCCAAATCCACTAAGACGTATGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCTCTCGGACATAGAGCCATCAGGTAGAAAGGTCCCTGAAGCAATGGACTTATCTGTTAATCAGGGTATCAACGGTGAAACATTGAATGTGGGCAACTATAGCGAAGAGATGTGGTTCATGGACATTGATATTTTGGATGCTAAACATGAAATGCGGCATGAAAAAGAGCAGCCAGAAAAAATAACTTGTGCAAATGGTGCAATATTTTCCAATCATCCAGATAAGAAAGAAGGCATTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATGGATGAGAATTCAATTGATACGTCTTCTGCAGATTCCTTGATGATAGAACAGAGGGAACATGATGTACACAAGCTCCAACATGTTATTGAAAATATAGTATTTCCTTTTAACACACAGAAAGAAGAAAAAGAAAAACAATATGAATCAACTCAAGATAACAGTAGACTAATGCAACCTAGGAAAAGTGATAAAAATGGGCTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTGTTGATTATGGGGATTTAGTGGAGCATGGTTCTGTATCGGTTACTGCAAAAAGTGAAGACGGGGGAATTAAAGGTGTTGTTGGCTTGCCACCCACTTTGGCTAACAAAGAAGTCTCGCCCGCAGAAGAAGCCACTGATGATCATCAAAACACATCTGCAGTAAGGCAGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAGGAAGGCCAAAAAGAAGGAAAAGAAAAGAAAGAAGCGGGCAGAAAAGAACAGAAAACTTGGGGTTAAAAGGTTGAAGCTGCAGCCAGTACAGAAACCAAAAACTATCACATATTGCCGCCATTATCTGAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTGCCTCTGACAAAATCGAAGCCGTGCTGTCACTTTGCTCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAGCTTTCCAAGTATCCTTGTAGCAATTTTGTGAGTAAAGGATCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACGAGATGCCAACCAAACAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGGAGCCTAAACTATTAGGAAATGCAAACTTAAGCAAGCCGCCTAATATCAGCAGCAGCAGTGCTTCTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAAACTCACTTGAATTCAGAAAAAGAGGTGACAGACACTGTAAAGAAACCACCGACAATGGCACCTAAAGGAATTAGTTTCATCAATTTTTCGAAATCATCTTCTCGAAAACAAGGAATGGTAACGCCAGACAAGGGAAATTCTGTTCAAATTGGGACCCTTTCTAATCAAAGTGCATCGGGCACGGCTTTAAACTTGATGAATCCTGGGAAAACGCCAGTGGGGGTACCTAAAGGAATTAATTTCCTTTCATTTGGAAAAGGTCGTATTTCCGGTTTCAAAAGTACTGTTTCCTCCTTTCTGAATAAGGAAAGTGGTATCAAGTTGTCTCAGAAAGGAAGTTTAGGTACGCCTGAACAAGCATCTCTAGAGAAGGATGATGGCAGTAAAATTGGCATTGGGCTGCAGACTGCTGTGTGCTCAAATGAGACTTTAAAGGAAAATCAATGTGTAGCGGGGAAAATGGATTTGGGTTTCCAAGGAAAAGCTTCAATACATCGTTATAGTAATGGTGTACAATTTAGCTCAACCTCTCATCAGGATCACAGTCTTAGTAGATCAGTGCAAGAGGGAGCTAAGGCATATACTCCTCAGACTTCAACTCTGACCTCATCTATGTTTCCAACTTCTCCATTTATTTCAGGTCAATCTTCAGAACGGTTAGCACCAGGACATCATAAGCACGTATATAACTCTGCTCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTCCCCTTTTGGTGCATCAGCTGTGAAATTAGAGATGAACAAGGCTGTATAG 3285 0.4024 MLNLGDPISTHLELKASYIEGEFNQNISKGFDGSFIANSSTSETKETSVPEISTSSTGHETQQKEMELVEPLCDAMVSLPIIEEGEFEKEERGQRVHVATHLSLDDGMEYNDPLNFSIELERLQKEMELVKPVSAAVVSFRTAEEGKYEKEEQRGQKACEAIQFSVDQGMNNEESNSTVKHEKQKKEMDSAKPACAAMVSLPTTKEGKLDKEEQHGQKASEAMHVSVDQAMNSEALISSINPNRQQKEMELVKPVSAAIISLPTTEEGEFKKEEQQGQRVPEAMQFSMDEGVNNEASNSHIKHEKQQKEMNSSKPVCAAIVSLPTTKEGELEKKVQDGQKVPEAMHISVDHGMDIESLILTTKPKSQHNPMELAKPGCAAIVSLPDIEEDELEKEEHNCSDGSKSTKTYVRKSKKRDLGLSDIEPSGRKVPEAMDLSVNQGINGETLNVGNYSEEMWFMDIDILDAKHEMRHEKEQPEKITCANGAIFSNHPDKKEGIEEGEISGDFRMDENSIDTSSADSLMIEQREHDVHKLQHVIENIVFPFNTQKEEKEKQYESTQDNSRLMQPRKSDKNGLPNGVDFGISREIVDYGDLVEHGSVSVTAKSEDGGIKGVVGLPPTLANKEVSPAEEATDDHQNTSAVRQKAGISCKKKRGPVTEERKAKKKEKKRKKRAEKNRKLGVKRLKLQPVQKPKTITYCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFVSKGSCSRGNACMFSHEMPTKQDVATSSNDSKAELEPKLLGNANLSKPPNISSSSASQQKQISDSKGIQTHLNSEKEVTDTVKKPPTMAPKGISFINFSKSSSRKQGMVTPDKGNSVQIGTLSNQSASGTALNLMNPGKTPVGVPKGINFLSFGKGRISGFKSTVSSFLNKESGIKLSQKGSLGTPEQASLEKDDGSKIGIGLQTAVCSNETLKENQCVAGKMDLGFQGKASIHRYSNGVQFSSTSHQDHSLSRSVQEGAKAYTPQTSTLTSSMFPTSPFISGQSSERLAPGHHKHVYNSAQRALLSTLSFAAEHESNIKLKSPFGASAVKLEMNKAV 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1632g00004 1094 Pfam CCCH-type zinc finger 699 718 IPR041367 -
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 38 62 - -
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 797 850 - -
Pral1632g00004 1094 SUPERFAMILY CCCH zinc finger 693 718 IPR036855 GO:0046872
Pral1632g00004 1094 Coils Coil 657 677 - -
Pral1632g00004 1094 SMART c3hfinal6 750 774 IPR000571 GO:0046872
Pral1632g00004 1094 SMART c3hfinal6 694 719 IPR000571 GO:0046872
Pral1632g00004 1094 SMART c3hfinal6 722 748 IPR000571 GO:0046872
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 170 192 - -
Pral1632g00004 1094 ProSiteProfiles Zinc finger C3H1-type profile. 693 720 IPR000571 GO:0046872
Pral1632g00004 1094 ProSiteProfiles Zinc finger C3H1-type profile. 722 746 IPR000571 GO:0046872
Pral1632g00004 1094 FunFam C3H-type transcription factor 651 722 - -
Pral1632g00004 1094 SUPERFAMILY CCCH zinc finger 751 777 IPR036855 GO:0046872
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 625 680 - -
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 176 190 - -
Pral1632g00004 1094 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 325 1084 IPR045124 GO:0003723|GO:0045892
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 801 825 - -
Pral1632g00004 1094 Gene3D - 649 723 - -
Pral1632g00004 1094 ProSiteProfiles Zinc finger C3H1-type profile. 747 775 IPR000571 GO:0046872
Pral1632g00004 1094 Gene3D - 724 788 - -
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 38 63 - -
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 549 580 - -
Pral1632g00004 1094 MobiDBLite consensus disorder prediction 664 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1632g00004 Pral-Chr1632 33537 40004 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral1632g00004 zf-CCCH_4 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1632g00004 - - pcin:129320444 1376.3