Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1628g00005 ATGAACGAGAACAGAGTTGACTGGCAAGGGCAGATACAACAGAGGCGGGGACTAAGTGGGGATTTCAATTATGAATCTAGTCATCGTTCTCATCAATGTTTTGATGTCAAACAGGCTTGGAATATTGGTGTTGGAGGAGCTGAAGAGTCACCACACATGGGCTCTGCAAAATCATCAACCACCATTATGGGCGGTTTTGAATCCCCCGCTTCTGCTTTTTATGCAGCAGAACGATGCATGGGGTTTCCGCAATATCATTCCCAAGCGAACATAAATAATCCCTCTTTTGGCTCTCCATTTTCTAAGATTCACGATTTGGAACTCCCTTTGTATCAATCTCCCAGGGAAAACACTTTCTTGGATCATTCGCCACACCAAGTTAACTTCAATGTCGAATCATCTAACCCCTTGCAAGCAGTGGCTAGATCCCAAGTAGACCCAGAAAGACCCAATAAAACTCCATGTGGACGTTTGCCAACCGACAAGTTTCTTCCAACTGAACAACACAAATTGTTCATTGATGTTGATTATGCCTCAGTCAGGGGAAACCATACGCAGGTTGGTTGTGGGTCATACAATTTACCTCTTTCTCATGTAAGCTTCTCCTCACAGCAAGAGAAGCTGTGTCCAACGGTTTCGGCAGCAAGTGTTACAATTAATGGAAATCCTACTTCTAATGGTGGGGCAGTAATCCCAAGTAAATCACGTATAAGGTGGACTCAGGATCTTCACGAGAAGTTTGTTGAATGTGTGAATCGCCTTGGGGGCTCTGAGAAGGCTACACCAAAAGCCATATTAAAGCTGATGAACACAGATGGGCTGACCATCTTCCATGTAAAGAGTCACTTGCAGAAATGTAGAATTGCAAAATACATGCCAGATCCAGCTCAAGGGAAGTCTGACAAAAAAGCCCATATAGACGATGTGCATCAAATTGATGTTAAAACTGGCTCGCAAATCAGAGAGGCGCTTCAGCTACAGCTAGATGTTCAGAGGCGTCTCCATGAACAGCTAGAGATTCAGAGAAGATTACAGCTTCGAATTGAAGAGCAAGGAAAGCAGCTGAAGATGATGTTTGACCAGCAGCAGAAAACATGTAATAGCTTCTCGAATCTGGGCAGTACAGAAAATGATGATCCATCAGTTAGTCATAAAGAGGTTGAGGTTTCAATTGCCGAGGGGTCTGGAAATTCCTCCTTCCCTTCCAAGATATGTTAG 1218 0.4384 MNENRVDWQGQIQQRRGLSGDFNYESSHRSHQCFDVKQAWNIGVGGAEESPHMGSAKSSTTIMGGFESPASAFYAAERCMGFPQYHSQANINNPSFGSPFSKIHDLELPLYQSPRENTFLDHSPHQVNFNVESSNPLQAVARSQVDPERPNKTPCGRLPTDKFLPTEQHKLFIDVDYASVRGNHTQVGCGSYNLPLSHVSFSSQQEKLCPTVSAASVTINGNPTSNGGAVIPSKSRIRWTQDLHEKFVECVNRLGGSEKATPKAILKLMNTDGLTIFHVKSHLQKCRIAKYMPDPAQGKSDKKAHIDDVHQIDVKTGSQIREALQLQLDVQRRLHEQLEIQRRLQLRIEEQGKQLKMMFDQQQKTCNSFSNLGSTENDDPSVSHKEVEVSIAEGSGNSSFPSKIC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1628g00005 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 291 IPR017930 -
Pral1628g00005 405 Pfam MYB-CC type transfactor, LHEQLE motif 319 365 IPR025756 -
Pral1628g00005 405 SUPERFAMILY Homeodomain-like 232 288 IPR009057 -
Pral1628g00005 405 Pfam Myb-like DNA-binding domain 238 286 IPR001005 -
Pral1628g00005 405 Gene3D - 233 292 - -
Pral1628g00005 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 228 381 IPR044848 GO:0003700
Pral1628g00005 405 Coils Coil 321 341 - -
Pral1628g00005 405 NCBIfam myb-like DNA-binding domain, SHAQKYF class 234 289 IPR006447 GO:0003677
Pral1628g00005 405 FunFam Myb family transcription factor 233 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1628g00005 Pral-Chr1628 28783 32254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1628g00005 222 364 G2-like Transcription Factor Family AT3G04450 54.422 1.04e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral1628g00005 Myb_DNA-binding 6.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1628g00005 - - ccaj:109797364 459.144