Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1623g00002 ATGGAAATCATGGAACAGAGTATCCTATGCAAATACACTGTCCACGAAAGTGTCACCAAGAAGTACACCAAGCCGGGTGCGGCCAACAAGGCTGCCGATGTTCACAGTCCCATAGAGCCCAGAGTGGTACGGATATCTGTCACCGATCCAGACGCCACTGACTCCTCCAGCGATGAGGAAGGAGAGTACTGCTTTAGTCGACAGAGAGTGAAGCGTTATGTGAACCAGGTTAACATCGAACCGAGCTGCAGGAGCTCGGTGACTTCCAATCCGCGGAAGAGGCCCGCAGGAGAAAGTCAAGGCTGCCGGCGGCCGGTTAAGGTTTCTTCTACGAATAACGGAAGGAAGTTCCGAGGAGTACGACAAAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCCGCTCGTCGTGTACGCGTGTGGTTGGGCACCTTCGACACTGCAGAGGAAGCAGCTATGGTGTATGACAATGCAGCGATTAAGATACGTGGACCAGACGCGTTGACAAACTTCGTGACCCCGCCGCCGAGGGAGAAGCCGGAAGAAGCAGAAGTGGCGGTGAAGCCGGAAATGAATGTAGTGGTGAAGTCGGAAGCGTCGGGCTCCGGCTACGATTCCGGCGACGAATCACATCGTCTGCCATCTCCCACGTCAGTGCTGCAATTCAGAAGCAATTGCAGCGAAGAGACCGAACCGCAGAAGGCAAGCGAGCCTGAAAAAGAGAGTGAGGCCGAGACGGAGACAGCCGAAGTGGAAGGTGTGTTTCGGGAGTGTGAAGGCGAAACGAGTATGCCAGATGAGAAGGTGGACTATTTCGGGTTCGACACGCAGAACGAGGATTACTTCGGGTTCGATATGCCAAATTGGGAGCAGGTGTTCGACTTCTCGACGCCAGAACCGGAATACTCATTAATGTTCGAAGAAAGCCCTCCGTTTCTGGGGGAGACGACGGCGATGTTACCGGAGGAAGATTTCAGAGTGGACGATATGATCGTGGGGGAGGCAGAGTTGGAGTTGGAGTTGGAGAAGTCATTCTCGCCGTCGACGCCGTGCCAAATGGACGATTACTTCCAAGACATACTGTCGGGTTCGGACCCTCTGGTGGTGCTGTGA 1116 0.5448 MEIMEQSILCKYTVHESVTKKYTKPGAANKAADVHSPIEPRVVRISVTDPDATDSSSDEEGEYCFSRQRVKRYVNQVNIEPSCRSSVTSNPRKRPAGESQGCRRPVKVSSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEEAEVAVKPEMNVVVKSEASGSGYDSGDESHRLPSPTSVLQFRSNCSEETEPQKASEPEKESEAETETAEVEGVFRECEGETSMPDEKVDYFGFDTQNEDYFGFDMPNWEQVFDFSTPEPEYSLMFEESPPFLGETTAMLPEEDFRVDDMIVGEAELELELEKSFSPSTPCQMDDYFQDILSGSDPLVVL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1623g00002 371 MobiDBLite consensus disorder prediction 83 120 - -
Pral1623g00002 371 MobiDBLite consensus disorder prediction 200 252 - -
Pral1623g00002 371 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Pral1623g00002 371 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Pral1623g00002 371 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Pral1623g00002 371 MobiDBLite consensus disorder prediction 212 230 - -
Pral1623g00002 371 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 40 265 - -
Pral1623g00002 371 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Pral1623g00002 371 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Pral1623g00002 371 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677
Pral1623g00002 371 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Pral1623g00002 371 CDD AP2 116 172 IPR001471 GO:0003700|GO:0006355
Pral1623g00002 371 MobiDBLite consensus disorder prediction 231 252 - -
Pral1623g00002 371 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1623g00002 Pral-Chr1623 10875 12478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1623g00002 10 284 AP2-EREBP Transcription Factor Family AT4G27950 43.631 1.55e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral1623g00002 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1623g00002 - - pcin:129303306 616.305