Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1617g00003 AATCCCTGTTTCTTTGGTGAGCATTTGGAAGTAAATTGTTTCGAGCAAGGCTTCATCAACGCAGAGGATGAGGAACAACCTTATATATCGAGCTTAGAGGATGAAAAGATGCCGTTTCTGCAGATGTTACAGAGTGTGGAATCTCCACAGCAGTTTTTCCCATTCGCAGAGGCAAATTTTCAAACACTTTTGAGGCTACAGAACCTGAAGAAACAACCAGCATGGGAAGAAAAAGCTCACATACCCAGGTTGGAGACCCAACTCCATGCCAAAGAACTTGAAAGCTGCGTCACACACGACGTTGTCGAGATCCCCTCGCCAGTGAAATCCGAAAACAACGAAGAATCTCATCTTCTTCCTCGTTCAGCCACAATGGTTCAGAAAGAACCCACCAATCAAGCTGAAAATTCTAGCAGAGACCCCAAACGGAGAAAGCGAAAGAGAACGAGACCTGTGAAGAACAAGGAAGAAGTGGAGAACCAGAGGATGACCCACATTGCTGTCGAACGGAACCGGCGACGCCAGATGAACGACCATCTCAGTGTTCTAAGGACACTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCGTCTATCATCGGAGGTGCAATTGATTTCGTGAAGGAATTGGAGCAACTACTTCAAACTCTCGAGGCGCAGAAGAGGATTAGAAAGAACGAAGAGATTGGATCTCCTTATGGAGAGACTGTGAAACCATCAACGCTTAGCTACGAAGAAGGAGAAGTAGAGTGTTATACTGGGGGCGAAGAAGAAGAGGTGAAGGAAGCAGAGATCATAGAGGTGATGGTAATTCAGACGCATGTGAATTTGAAGATTCGATGCAGAAAGAGACAGGGGCAATTGATGAGAGCCATTGTTGGGTTGGAAGATCTTAGGCTCAGCATTCTGCATCTCAACATCACCTCCTCGCTGGGATCGGTACTTTACTGTTTCAATCTCAAGATAGAAGAAGAGTGCAGGGTAGGGACGTCGGCGAATGAAATAGCAGAAGCGGTCCGGCATATATTCAGACCCATTGGTAATCAGTAG 1053 0.4625 NPCFFGEHLEVNCFEQGFINAEDEEQPYISSLEDEKMPFLQMLQSVESPQQFFPFAEANFQTLLRLQNLKKQPAWEEKAHIPRLETQLHAKELESCVTHDVVEIPSPVKSENNEESHLLPRSATMVQKEPTNQAENSSRDPKRRKRKRTRPVKNKEEVENQRMTHIAVERNRRRQMNDHLSVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQTLEAQKRIRKNEEIGSPYGETVKPSTLSYEEGEVECYTGGEEEEVKEAEIIEVMVIQTHVNLKIRCRKRQGQLMRAIVGLEDLRLSILHLNITSSLGSVLYCFNLKIEEECRVGTSANEIAEAVRHIFRPIGNQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1617g00003 350 PANTHER MAX DIMERIZATION, MAD 89 347 - -
Pral1617g00003 350 MobiDBLite consensus disorder prediction 109 134 - -
Pral1617g00003 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 226 IPR036638 GO:0046983
Pral1617g00003 350 Coils Coil 208 228 - -
Pral1617g00003 350 Gene3D - 151 232 IPR036638 GO:0046983
Pral1617g00003 350 MobiDBLite consensus disorder prediction 104 158 - -
Pral1617g00003 350 SMART finulus 166 217 IPR011598 GO:0046983
Pral1617g00003 350 CDD bHLH_AtFAMA_like 163 234 - -
Pral1617g00003 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 211 IPR011598 GO:0046983
Pral1617g00003 350 Pfam Helix-loop-helix DNA-binding domain 161 212 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1617g00003 Pral-Chr1617 24304 27131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1617g00003 18 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 40.169 9.26e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1617g00003 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1617g00003 - - qsa:O6P43_018514 373.244