Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1617g00001 ATGGCTCAGGCTCAGGCACCACAATCTCAGTCTCAGTCTAAGCCTCTTCACGACGAAGCGAGCAGTCACCAATCGCCAAAAATAGATGACATCGAAGAAGAGAGTTTCGCCTACGCCATGCAGCTCGCGACCTCCACTGCGATTTCCATGGCGATGCAAACAGCGGTGGAGCTCGGTGTCTTCGACGTCATTCATAGAGCTGGTCACGGCGCCAAGCTCTCCGCCGCTGAGATCGCGACGGAGCTTTCTTGCAAGAACTCCGAAGCGCCTTCCGCCCTCGATCGTCTCCTCTGGCTTCTAGCGTCGCACTCTGTTCTTACCTGTTCCGTCATCACCGATGAGGATCGAGGGCCGGGGTGTTCCCGACGAGTGTACGGCCTCCGTCCGGTGGCCAAATTCTTCGCGAGAAATGAAGATGGGGTGTCGTTGGGCCCTTTTATTGCGTTGATTCAAGATCAGGTCTTCCTTGACAGCTGGCGAGAATTGAAGGATGCAATATGTGAAGGAGGTATAGCGTTCAATAGGGTGCATGGCTCACATGCTTTCGAGTATCCGGGATTGGATTCAAGGTTTAACGAGGTCTTCAACAAGGCAATGGTGAATCAGACCACCTTAGTTGTGACCAAAATTCTTGAATCCTACCGAGGTTTCGAGGACATCACCCGACTCGTCGACGTTGGTGGAGGTCTTGGGGTTACTCTAAGCTTGATCACTAATAAATGTCCTCACGTTCAAGGAATCAATTTCGACCTGCCTCATGTCATCCAGCACGCTCCTCCTTATCCTGGAGTCGAACATGTGGGAGGAGATATGTTTGAAAGCGTGCCTCAAGGAGATGCCATCTTCATGAAGTGGATACTTCATGATTGGAGTGATGAATGGTGCTTGAAGCTGTTGAAGAACTGTTACAATGCCATTCCTGAAGATGGAAAAGTGGTCGCGGTAGACGCAGTTTTGCCCATTGTACCACAGACTTCTGCTGCGGCAAAGAGCACCTCCCAGCTTGATCTCGTAATGCTGACTCAGAACCCAGGTGGCAAAGAGAGAAGTGAGCAAGAGTTCATGGAATTGGCTACGGCAGCAGGGTTTAGTGGCATCAGATATGAATGTTTTGTTCGTAACTTTTGGATTATGGAATTCTTCAAATAG 1149 0.503 MAQAQAPQSQSQSKPLHDEASSHQSPKIDDIEEESFAYAMQLATSTAISMAMQTAVELGVFDVIHRAGHGAKLSAAEIATELSCKNSEAPSALDRLLWLLASHSVLTCSVITDEDRGPGCSRRVYGLRPVAKFFARNEDGVSLGPFIALIQDQVFLDSWRELKDAICEGGIAFNRVHGSHAFEYPGLDSRFNEVFNKAMVNQTTLVVTKILESYRGFEDITRLVDVGGGLGVTLSLITNKCPHVQGINFDLPHVIQHAPPYPGVEHVGGDMFESVPQGDAIFMKWILHDWSDEWCLKLLKNCYNAIPEDGKVVAVDAVLPIVPQTSAAAKSTSQLDLVMLTQNPGGKERSEQEFMELATAAGFSGIRYECFVRNFWIMEFFK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1617g00001 382 CDD AdoMet_MTases 222 319 - -
Pral1617g00001 382 PANTHER O-METHYLTRANSFERASE 39 367 IPR016461 GO:0008168
Pral1617g00001 382 Gene3D - 17 134 IPR036388 -
Pral1617g00001 382 SUPERFAMILY "Winged helix" DNA-binding domain 32 137 IPR036390 -
Pral1617g00001 382 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 139 380 IPR029063 -
Pral1617g00001 382 Pfam Dimerisation domain 50 101 IPR012967 GO:0046983
Pral1617g00001 382 MobiDBLite consensus disorder prediction 1 19 - -
Pral1617g00001 382 Pfam O-methyltransferase domain 159 364 IPR001077 GO:0008171
Pral1617g00001 382 MobiDBLite consensus disorder prediction 1 26 - -
Pral1617g00001 382 FunFam Caffeic acid 3-O-methyltransferase 18 134 - -
Pral1617g00001 382 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 40 382 IPR016461 GO:0008168
Pral1617g00001 382 FunFam Caffeic acid O-methyltransferase 135 382 - -
Pral1617g00001 382 Gene3D Vaccinia Virus protein VP39 135 382 IPR029063 -
Pral1617g00001 382 PIRSF O-mtase 17 382 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1617g00001 Pral-Chr1617 12098 14936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1617g00001 32 382 Monolignol Biosynthesis Gene Families AT5G54160 52.707 2.65e-138 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1617g00001 K13066 - qsa:O6P43_027445 518.464