Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1616g00012 ATGGCTTTCCTCCCCTTTCTTGATCATGAAAATCTTGTATTTCAGGTTTCTCGATCAATTGGTGATGTATATCTCAAAAGGGCAGAATTTAACAAGGAACCTTTGTATGCTAAGTTTCGTCTTCGTGAACCTTTTAGCAGACCAATTTTGAGCTCTGAGCCATCTATTTCTGTCCATGAACTTCAACAGCATGATCAGTTCCTCATATTCGCTTCTGATGGTTTGTGGGAACACCTTAGCAATCAGGATGCTGTTAACATAGTTCAAAATCACCCTCGCAGTCAGGGAAGTGCTCGGAGACTGGTCAAAGCTGCCTTGCATGAAGCAGCCAAAAAAAGAGAGATGAGATACTCAGATTTGAAGAAAATTGACCGTGGTGTCCGCCGCCATTTCCATGATGACATTACAGTAGTAGTTGTATTCCTCGACTCCAATCTTGTGAGCAGAGATGGGCCGGTGAGAGGTCCTTCTTTATCAGTGAGGGGTGGAGGTGTTAACCTACGCGCTAAAACACTGGCTCCCTGCGCAACTCCTTTGGAAACTTAG 546 0.4432 MAFLPFLDHENLVFQVSRSIGDVYLKRAEFNKEPLYAKFRLREPFSRPILSSEPSISVHELQQHDQFLIFASDGLWEHLSNQDAVNIVQNHPRSQGSARRLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRDGPVRGPSLSVRGGGVNLRAKTLAPCATPLET 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1616g00012 181 SUPERFAMILY PP2C-like 11 143 IPR036457 -
Pral1616g00012 181 CDD PP2Cc 13 142 IPR001932 -
Pral1616g00012 181 Gene3D - 10 150 IPR036457 -
Pral1616g00012 181 ProSiteProfiles PPM-type phosphatase domain profile. 1 142 IPR001932 -
Pral1616g00012 181 PANTHER PROTEIN PHOSPHATASE 13 140 IPR015655 GO:0004722|GO:0006470
Pral1616g00012 181 Pfam Protein phosphatase 2C 13 111 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1616g00012 Pral-Chr1616 52370 53662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1616g00012 13 180 PP2C-type Phosphatase Gene Family AT4G38520 76.190 1.39e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1616g00012 K01102 - nnu:104603663 295.049