Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1616g00009 ATGGATTTTGTGGCGAATCCTTTTCCTTTGCCTTCTTCCGCGTTGGGCTCCTTCGGGAGCTTCGTTGAGAGGGTTAGACGCATAAGCAGTCTCGCGGTTTCTGTTATAATTGGAAACATCCTCTCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACGTTATTGGGTGCCATGACAGGAGCTTTGATAGGCCAAGAGACCGAGAGTGGCTTCATTAGAGGAGCAGCAGTTGGTGCCATTTCCGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGCCTCTTATATCTGATTGATGTCATTGCTAGCCTATTGAGTGGGAGACTTGTGCGTGAGAGAATTGGCCCTGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAGCAAACTTTGAGGAGGTTCAAAACATCTTTGACACTGGTGGTTGCAAGGGCTTAACTGGGGATTGTGTTGAGAAGATCCCGAAGATCACAATCACAAATGATAATATTATTGATGCTTCGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTTCAGCCTGGAGAGACGGTTAGAAGTTTGCCTCATTGCCATCACATGTTCCACCTACCATGCATCGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTGTAA 708 0.4633 MDFVANPFPLPSSALGSFGSFVERVRRISSLAVSVIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEANFEEVQNIFDTGGCKGLTGDCVEKIPKITITNDNIIDASGERVSCSVCLQDFQPGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1616g00009 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 235 IPR013083 -
Pral1616g00009 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Pral1616g00009 235 SMART ring_2 190 231 IPR001841 -
Pral1616g00009 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 234 IPR044523 -
Pral1616g00009 235 Pfam Ring finger domain 189 232 IPR001841 -
Pral1616g00009 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Pral1616g00009 235 CDD RING-H2_NIPL1-like 189 232 - -
Pral1616g00009 235 SUPERFAMILY RING/U-box 179 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1616g00009 Pral-Chr1616 38215 40204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1616g00009 20 235 C3H Transcription Factor Family AT5G66070 77.315 5.85e-118 333