Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1616g00008 ATGGATTTTGTGGCGAATCCTTTTCCTTTGCCTTCTTCCGCGTTGGGCTCCTTCGGGAGCTTCGTTGAGAGGGTTAGACGCATAAGCAGTCTCGCGGTTTCTGTTATAATTGGAAACATCCTCTCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACGTTATTGGGTGCCATGACAGGAGCTTTGATAGGCCAAGAGACCGAGAGTGGCTTCATTAGAGGAGCAGCAGTTGGTGCCATTTCCGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGCCTCTTATATCTGATTGATGTCATTGCTAGCCTATTGAGTGGGAGACTTGTGCGTGAGAGAATTGGCCCTGCCATGTTAAGTGCTGTCCAAAGTCAGGTTAGCATTTTTTGTCCAATTAATGAGACATATATTTGGATACGAACTCTCATCGAGAAGATTGCTCATTATATCTCTGCTCTTAAATGTCAGATGGGTGCTGTTGAAGCAAACTTTGAGGAGGTTCAAAACATCTTTGACACTGGTGGTTGCAAGGGCTTAACTGGGGATTGTGTTGAGAAGATCCCGAAGATCACAATCACAAATGATAATATTATTGATGCTTCGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTTCAGCCTGGAGAGACGGTTAGAAGTTTGCCTCATTGCCATCACATGTTCCACCTACCATGCATCGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTGTAA 801 0.4482 MDFVANPFPLPSSALGSFGSFVERVRRISSLAVSVIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQVSIFCPINETYIWIRTLIEKIAHYISALKCQMGAVEANFEEVQNIFDTGGCKGLTGDCVEKIPKITITNDNIIDASGERVSCSVCLQDFQPGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1616g00008 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 266 IPR013083 -
Pral1616g00008 266 SUPERFAMILY RING/U-box 212 266 - -
Pral1616g00008 266 ProSiteProfiles Zinc finger RING-type profile. 221 263 IPR001841 -
Pral1616g00008 266 SMART ring_2 221 262 IPR001841 -
Pral1616g00008 266 CDD RING-H2_NIPL1-like 220 263 - -
Pral1616g00008 266 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 265 IPR044523 -
Pral1616g00008 266 Pfam Ring finger domain 220 263 IPR001841 -
Pral1616g00008 266 FunFam NEP1-interacting protein-like 1 181 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1616g00008 Pral-Chr1616 38215 40204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1616g00008 20 266 C3H Transcription Factor Family AT5G66070 67.611 3.65e-111 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1616g00008 - - ccaj:109800586 398.667