Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1612g00016 ATGGATTTGAATTCGCATCAGAATTATCTGCCCCAGCAGCATCAATCCAATTCAGGATTGGCTCGGTTTCGCTCTGCGCCCAGCTCGCTTCTCGCTAATTTCAGACAAGCTGCTGAATCTGTTAAATCCGAGAGACGAATTTCGAGATTCGCAAACAGCAGTAATAGCACCGATACGGCGTCGTCAAGCTTTCAAGAAGTCGAATCCGAACACAAGCCCCCTAAATCTCCATCGGAGGCTGCTCTGAGCCGTATGAATTCCCAGCAAGGCTATAGTGGCAGCGGGCTGCCACCTCACTATCCAAGGCATAGTTCTTCTTACAGTTCTTCCATGGACACCTCCTTTGGACAGATGGGTTCAATTGGAATGGATCACGTAACTCAGCCGAAAAGCTTTGCTTCGCCTCTTCTTAGGCAAAGTAGCTCCCCTGCTGGTCTTTTCTCCAACATCTCATTTCCTAATGCGTATGGCTCCAACAAAGGGATAAGAAACTATGGCGGGATGAACGGCAGTAGCAATGATGGACTTACTCCATCTATCAACAACGGATTGAAGAATCAGATTGGCTTCTCATCAAGAAGTAGCTCCCTAGGAGCCCTGTCCCACATCTCTGAAAATGAATGTGAGGGTACTGGAGCAACGAGCCCAGATGATGGTAGAGTGGGAGCTAATAACAGTGGCGATACTCGGTATTATGGCCCTGGCTTTCCTTATGCTTCTTGGAATGATACCTCATATGTGTCAGAAAATCTCCCTGGTTTTAAAAGAGATCAAACTGGCAATGAAAAGGTGTACTCTGACGTTCAGAATATTGAGCCTGGAAGTCGGGTTAATGTATTATCGCATCACTTGAGTTTGCCAAAAACCCCATCACATATGGCTGCTGTGGAGAAGTTTCTTCAATTCCCAGATTCTGTGCCTTGTAAAATAAGAGCAAAGCGGGGCTGCGCCACTCATCCACGAAGCATAGCCGAAAGGGTCAGAAGAACTCGTATCAGTGAGCGAATGAAGAAGTTACAAGATCTTGTCCCAAACATGGACAAGCAAACGAACACGGCAGACATGTTGGACTTGGCTGTTGTGTATATTAAAGATCTTCAGAAACAATTCAAGACTCTGAGTGAGAAACGGGCAAATTGCAAATGTACTAACGCGCGGAAAGCACATGGAAATTAA 1176 0.4609 MDLNSHQNYLPQQHQSNSGLARFRSAPSSLLANFRQAAESVKSERRISRFANSSNSTDTASSSFQEVESEHKPPKSPSEAALSRMNSQQGYSGSGLPPHYPRHSSSYSSSMDTSFGQMGSIGMDHVTQPKSFASPLLRQSSSPAGLFSNISFPNAYGSNKGIRNYGGMNGSSNDGLTPSINNGLKNQIGFSSRSSSLGALSHISENECEGTGATSPDDGRVGANNSGDTRYYGPGFPYASWNDTSYVSENLPGFKRDQTGNEKVYSDVQNIEPGSRVNVLSHHLSLPKTPSHMAAVEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMDKQTNTADMLDLAVVYIKDLQKQFKTLSEKRANCKCTNARKAHGN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1612g00016 391 FunFam Transcription factor bHLH130 family 317 386 - -
Pral1612g00016 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Pral1612g00016 391 SMART finulus 322 372 IPR011598 GO:0046983
Pral1612g00016 391 Coils Coil 363 383 - -
Pral1612g00016 391 MobiDBLite consensus disorder prediction 1 22 - -
Pral1612g00016 391 MobiDBLite consensus disorder prediction 207 229 - -
Pral1612g00016 391 MobiDBLite consensus disorder prediction 47 67 - -
Pral1612g00016 391 Pfam Helix-loop-helix DNA-binding domain 321 367 IPR011598 GO:0046983
Pral1612g00016 391 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 381 - -
Pral1612g00016 391 Gene3D - 317 388 IPR036638 GO:0046983
Pral1612g00016 391 MobiDBLite consensus disorder prediction 80 114 - -
Pral1612g00016 391 MobiDBLite consensus disorder prediction 36 114 - -
Pral1612g00016 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 380 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1612g00016 Pral-Chr1612 53620 56595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1612g00016 1 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.729 1.76e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1612g00016 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1612g00016 - - qsa:O6P43_006556 423.32