Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1612g00013 ATGGAGCAAACTACAGGAGGCCTGCCCGGATCCGGTCTTGCTATTCGTGAGCATGACAAGACCGCGCTTGAATCCATCCAGTTCAACCAGGAAATTCAGGGAATCATGGCACCGCCCCCTGAAAACGCCAGCTCCTTCACTGCACTTCTCGAACTCCCGCCGCCGCAAGCCGTGGAGCTCCTTCACTCGCCGGACTGTGGTGGAACCGCCGCTACTAGCAGCGCGTCTGCGAAATCCCTATGCCAAATCAACAACCAGAAACCCTATCTATTCCACTCTTTCAGTGGCAATTTAACCTTTCCTGCGAACGCCGCTTTGATTGAACGCGCTGCCAAGTTCTCTGTGTTTGCCGGGGAAAACTCTAACCCAGAGGATTCCAGCGTGGTTGGACGTAATTCGAGTGCCAATTTGGATAAAGTAAAGAATGAGCCCCCAGAGAGCGATTCGAATCCTAGTCCAATGCAGGGCTGTGCTTCTGATCCCACCGTAGAGAACCCGAACCAGAGGGCTGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCCTCAAAGAAGAGCAAGGGCGTCGCCGACGAGGCCTCCGGGGAAGCGGAAAAGCTTCCCTATGTTCATGTCCGAGCTCGTCGAGGTCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAACAAGGGTGCATCTCTCATGGATTGTAATTTCCCCAGCACGGTTGCACCTTTGATGTGGCCGGAAATCCCAGTCAATGGAAACAGACAGCAATATCAACAACAGTGGCATGTTGATGCATTCCACCAACCACTTTGGGGCAGAGAAGGAGGAAACCATAACTTTATCACTCCAGATAACTCTTTTTTGAGTTATGACTCGTCAGCAAATTCAGCAACTCTGCACTCAAATCAGTTGAAGATGGAACTGTGA 978 0.5133 MEQTTGGLPGSGLAIREHDKTALESIQFNQEIQGIMAPPPENASSFTALLELPPPQAVELLHSPDCGGTAATSSASAKSLCQINNQKPYLFHSFSGNLTFPANAALIERAAKFSVFAGENSNPEDSSVVGRNSSANLDKVKNEPPESDSNPSPMQGCASDPTVENPNQRAAKRKEREKKVKVSSKKSKGVADEASGEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKGASLMDCNFPSTVAPLMWPEIPVNGNRQQYQQQWHVDAFHQPLWGREGGNHNFITPDNSFLSYDSSANSATLHSNQLKMEL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1612g00013 325 Pfam Helix-loop-helix DNA-binding domain 216 241 IPR011598 GO:0046983
Pral1612g00013 325 MobiDBLite consensus disorder prediction 182 197 - -
Pral1612g00013 325 MobiDBLite consensus disorder prediction 119 197 - -
Pral1612g00013 325 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 106 244 IPR024097 GO:0006355
Pral1612g00013 325 MobiDBLite consensus disorder prediction 119 166 - -
Pral1612g00013 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 245 IPR036638 GO:0046983
Pral1612g00013 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 273 IPR011598 GO:0046983
Pral1612g00013 325 Gene3D - 203 251 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1612g00013 Pral-Chr1612 32616 38081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1612g00013 22 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 45.383 9.77e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1612g00013 HLH 6.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1612g00013 - - gmx:100814124 397.127