Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1612g00004 ATGGCTACATCCTGTATATACCTGTTCCTTCTCTCTGTGACCTTCACAACGTTCAATCTTGGTTCATCTTCGTCATCAGAGGCGGATATCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAGGAAGGCTCTGTCAAGCTGGTCCAATACTTCCTCCACTCACTACTGTAACTGGACCGGAATCGCCTGCTCCTCCACTTCTCCTTCCCTCTCTGTCACGTCCATTAATCTTCAAAACTTGAACCTTTCTGGGGACCTCTCGTCTTCGATATGTGATCTTCCAAATCTGTCATACCTCAATCTTGCTGATAATTTATTCAACCAGCCCATCCCTCTCCATCTTTCTCAGTGTAGTTCGTTACAGACTTTGAATCTCAGTAATAATCTCATATGGGGAACCATCCCAATGCAGATTTCTCAGTTTGGTTCATTGAGAGTGCTTGATTTCAGCAGAAATCACATCGAAGGAAATATCCCAGAAAGCTTGGGCTCCCTGAAGAATCTCGAAGTCCTTAACATGGGAAGTAACCTACTATCAGGTGATGTGCCTGCTATCTTCGTGAATTTAACTAAGCTTGCCGTTCTTGACTTGTCTGAAAATCCATACTTGGAAAGTGAGATTCCAGAGGGTATGGGCGAACTTGGAAGTCTCAGGCAACTTCTGTTGCAAAGTTCTGGTTTTCACGGTGAAATTCCGGATTCTTTTGCGAACCTGCGTAGTTTGACCCATTTAGACCTCTCCCAGAACAATCTAACCGGTGAGATTTCTCAGGGTCTGGTGTCTTCTCTCAAGAACCTGGTGTCCTTTGATGTTTCACAGAACAAGCTTTCGGGGTCACTACCAAATGGCGTTTGTAATGCAAAAGGTCTCATAAATCTCAGTCTCCATACAAATATTTTCAGTGGTTCAATGCCCAACACCATTGGTGAATGTAAGAATCTTGAGAGATTTCAAGTTCAGAACAACGAGTTAACTGGAGACTTCCCTTCTTCGTTATGGTCATTACCTAAAGTTAAGCTCATTAGAGCTGAAAACAACAGATTCTCAGGACAAATACCTGAATCCATATCGGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAATAACAGCTTTGCTGGTAAAATTCCTCGGAGTCTTGGGTTGGTCAAGAGCTTATACAGATTCTCTGCGTCTCTCAATCGTTTCTACGGAGAACTTCCTGTAAACTTCTGTGATTCCCCTGTTATGAGTATTGTGAATCTCTCTCACAATTCCCTTTCTGGTCCAATCCCAGAGCTGACCAAATGCAGGAAACTGGTTTCATTGTCTCTAGCAGACAATAGTCTTACCGGACAAATCCCTCCTTCCCTTGCTGACTTGCCAGTGCTAACTTACCTTGATCTTTCAGCTAACAATCTCACAGGCTCAATACCACTAGGACTTCAAAATTTAAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCTGGCAAGGTACCTTATTCCCTGATTTCTGGTCTTCCTGCTTCATTTTTGGAAGGAAACCCTGAACTTTGTGGCCCTGGATTACCCACTTCCTGTTCTGATGACCCTCCAAGAGACCATTCCGGAGGTCTCACTCCGCTGGCATGTGCCCTTATCTCTGTAGCATTCGTTGTGGGAACTGCGGTGTTTGTTGGTGGATTTATTTTGTATAGGAAGTTTAGCAAGAGGAATCAAATAGGATTTTGGCGCTCAGTGTTCTTCTATCCCCTTAGAATTACTGAGCAAGATCTGCTTATAGGAATGGATGAGAAAAGCTTGATTGGAAATGGGGGTGTTTTTGGCAAAGTTTATGTTGTGAGTTTACCTAGCGGTGAACAAGTGGCCGTAAAGAAGCTAGTCAATTTTGGCAACCAGACGTCAAAAAGTTTGAAAGCTGAGGTCAAGACATTGGCTAAGATTAGGCATAAGAATGTTGTTAAAATCCTGGGGTTTTGCCATTCTGATGAGTCAATCTTTCTCATTTATGAGTACTTGCGAGAAGGAAGCTTAGGGGACTTGATTTCCCGTGAGGATTTTGAGTTGCAGTGGGAGGCAAGATTGAGGATTGCCATCAGAGTCGCTCAAGCACTAGCTTATCTTCACAATGACTATGTTCCTCACTTGCTTCACAGAAACGTTAAGTCCAGGAACGTTCTGCTGGATTCAAACTTTGAGCCGAAACTCACAGATTTCGCTCTTGATCGAATCGTGGGAGAAGCCGCATTTCAGTCAACTGTTGCTTCTGAAGCAGCATCTTCCTGCTATAATGCTCCAGAATATGGGTACAGTAAGAAACCAACTGAAGAATTGGACATATACAGCTATGGTGTTTTATTGCTAGAGCTTGTGACTGGGAAGCAAGCAGAGCAAACAATATCAACAGAATCTCTTGACATAGTGAAGTGGGTTCGAAGGAGAGTGAACATCACTGATGGGATGCATCAAGTACTTGATCCCAAAATATCACATTCCAGTCAGCGAGAAATGATTGGAGCTCTGGAAATCGCTCTTCGTTGCACTTCCGTGGTGCCTGAAAAAAGACCATCGATGGTAGAAGTTGTTCGAGCTCTTCAGTTCCTTGAGTCACAAACCATCGCTGCAAATTCTCAGGATTCGAATGAGGAACCCTCGATTCCAATATGA 2655 0.4358 MATSCIYLFLLSVTFTTFNLGSSSSSEADILLSFKASIEDSRKALSSWSNTSSTHYCNWTGIACSSTSPSLSVTSINLQNLNLSGDLSSSICDLPNLSYLNLADNLFNQPIPLHLSQCSSLQTLNLSNNLIWGTIPMQISQFGSLRVLDFSRNHIEGNIPESLGSLKNLEVLNMGSNLLSGDVPAIFVNLTKLAVLDLSENPYLESEIPEGMGELGSLRQLLLQSSGFHGEIPDSFANLRSLTHLDLSQNNLTGEISQGLVSSLKNLVSFDVSQNKLSGSLPNGVCNAKGLINLSLHTNIFSGSMPNTIGECKNLERFQVQNNELTGDFPSSLWSLPKVKLIRAENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPRSLGLVKSLYRFSASLNRFYGELPVNFCDSPVMSIVNLSHNSLSGPIPELTKCRKLVSLSLADNSLTGQIPPSLADLPVLTYLDLSANNLTGSIPLGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPELCGPGLPTSCSDDPPRDHSGGLTPLACALISVAFVVGTAVFVGGFILYRKFSKRNQIGFWRSVFFYPLRITEQDLLIGMDEKSLIGNGGVFGKVYVVSLPSGEQVAVKKLVNFGNQTSKSLKAEVKTLAKIRHKNVVKILGFCHSDESIFLIYEYLREGSLGDLISREDFELQWEARLRIAIRVAQALAYLHNDYVPHLLHRNVKSRNVLLDSNFEPKLTDFALDRIVGEAAFQSTVASEAASSCYNAPEYGYSKKPTEELDIYSYGVLLLELVTGKQAEQTISTESLDIVKWVRRRVNITDGMHQVLDPKISHSSQREMIGALEIALRCTSVVPEKRPSMVEVVRALQFLESQTIAANSQDSNEEPSIPI 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1612g00004 884 Pfam Protein tyrosine and serine/threonine kinase 599 861 IPR001245 GO:0004672|GO:0006468
Pral1612g00004 884 Gene3D Transferase(Phosphotransferase) domain 1 669 881 - -
Pral1612g00004 884 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1612g00004 884 Gene3D Ribonuclease Inhibitor 186 260 IPR032675 -
Pral1612g00004 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 862 - -
Pral1612g00004 884 SUPERFAMILY L domain-like 336 444 - -
Pral1612g00004 884 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Pral1612g00004 884 SUPERFAMILY Protein kinase-like (PK-like) 595 864 IPR011009 -
Pral1612g00004 884 Gene3D Ribonuclease Inhibitor 261 526 IPR032675 -
Pral1612g00004 884 FunFam Leucine-rich repeat family protein 26 184 - -
Pral1612g00004 884 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Pral1612g00004 884 FunFam - 587 668 - -
Pral1612g00004 884 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 869 - -
Pral1612g00004 884 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 263 526 - -
Pral1612g00004 884 SUPERFAMILY RNI-like 75 503 - -
Pral1612g00004 884 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Pral1612g00004 884 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Pral1612g00004 884 SMART LRR_typ_2 190 215 IPR003591 -
Pral1612g00004 884 SMART LRR_typ_2 94 118 IPR003591 -
Pral1612g00004 884 SMART LRR_typ_2 142 165 IPR003591 -
Pral1612g00004 884 SMART LRR_typ_2 455 478 IPR003591 -
Pral1612g00004 884 SMART LRR_typ_2 264 288 IPR003591 -
Pral1612g00004 884 SMART LRR_typ_2 166 189 IPR003591 -
Pral1612g00004 884 SMART LRR_typ_2 239 263 IPR003591 -
Pral1612g00004 884 ProSiteProfiles Leucine-rich repeat profile. 77 98 IPR001611 GO:0005515
Pral1612g00004 884 PRINTS Leucine-rich repeat signature 242 255 - -
Pral1612g00004 884 PRINTS Leucine-rich repeat signature 455 468 - -
Pral1612g00004 884 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1612g00004 Pral-Chr1612 14492 17594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1612g00004 31 862 Receptor kinase-like Gene Family AT5G06940 63.680 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral1612g00004 PK_Tyr_Ser-Thr 5.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1612g00004 - - gmx:100794428 1375.15