Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1608g00004 ATGGCACACCACACATTTTCCTTTTCTTCTTCTTCTGCAATGATGCTTCTCATTGTTGTCTCCATCAGCATTCTCCTCCAAGACTTCACCGCCACCGGCTATGGCAATTGGCAGAGTGCTCACGCCACCTTCTACGGCGGTGGTGATGCCACGGGCACAATGGGAGGGGCATGTGGGTATGGGAATTTGTACAGTCAGGGCTATGGAACCAACACGGCAGCTCTAAGCACAGCTCTGTTCAACAATGGCTTAAGTTGTGGGGCGTGTTATGAGTTAACATGTACCAGTGATCCAAGATGGTGCAAGCCTGGCTCCATCATTGTCACTGCCACAAACTTTTGCCCTCCAAACTTGGCTTTGCCCAACAACAACGGAGGTTGGTGCAACCCTCCACTTCAACACTTTGATATGGCCGAACCTGCCTTCCTCCAAATTGCTCAGTACAGAGCAGGGATCGTCCCTGTCTCCTTCAGAAGAGTTCCGTGTATGAAGAAAGGAGGAGTTAGGTTCACCATTAATGGTCACTCATATTTCAACTTGGTTTTGATCACCAACGTGGGAGGAGCAGGGGATGTTCATGCAGTCTCAATCAAAGGGTCCAGAACTGGCTGGCAATCCATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAGCTCCTACCTCAATGGCCAAGCCCTCTCTTTCCAAGTCACCAGCAGTGATGGTAGGACCCTCACAAGCTACAACGTGGCACCTCCCAATTGGCAGTTCGGCCAGACCTTCCAAGGTGGTCAGTTTTAA 780 0.509 MAHHTFSFSSSSAMMLLIVVSISILLQDFTATGYGNWQSAHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYELTCTSDPRWCKPGSIIVTATNFCPPNLALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQSMSRNWGQNWQSSSYLNGQALSFQVTSSDGRTLTSYNVAPPNWQFGQTFQGGQF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1608g00004 259 Pfam Lytic transglycolase 72 157 IPR009009 -
Pral1608g00004 259 SMART dpbb_1 72 157 IPR007112 -
Pral1608g00004 259 Gene3D - 167 259 IPR036749 -
Pral1608g00004 259 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Pral1608g00004 259 Gene3D - 24 163 IPR036908 -
Pral1608g00004 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Pral1608g00004 259 PANTHER EXPANSIN-A15 13 259 IPR002963 GO:0009664
Pral1608g00004 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 167 IPR007112 -
Pral1608g00004 259 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Pral1608g00004 259 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Pral1608g00004 259 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Pral1608g00004 259 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Pral1608g00004 259 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Pral1608g00004 259 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Pral1608g00004 259 FunFam Expansin 27 163 - -
Pral1608g00004 259 SUPERFAMILY Barwin-like endoglucanases 36 185 IPR036908 -
Pral1608g00004 259 CDD DPBB_EXPA_N 37 162 - -
Pral1608g00004 259 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Pral1608g00004 259 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Pral1608g00004 259 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Pral1608g00004 259 FunFam Expansin 167 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1608g00004 Pral-Chr1608 11790 12881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1608g00004 12 259 Expansin Gene Family AT2G40610 78.313 1.67e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1608g00004 - K20628 csv:101209633 419.853