Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1606g00001 ATGAAAAAGGAAGGGACAGGATATGGAGGAAGAAGAGTCATTCGGGTACATGAACGGCAAAGCTATTCTTGGCTTTGGGGTTCTATCTCCACAACAACGCCCAATACTGGAATGACCACGTACGGAGATTCCGCGTTTGTGCCGTCGAATGGCTTGGACCAGGAAGGGAGGAGGACAAAGCAACTGAATGTTGAAGACGCTGGCTGTGTTAGTCGCAGTCAGCGAATGGAGGCTGTGTTTCGAATGGCTCGGACTAGGAATTTTAGAGGTGAGGACACCCGCTCCAACTTCACAAGCCACCTTCATGAAGCTCTTCGCAGAAACCAAATAGATACATACATCGACTATAGACTTGAGAAGGGAGATGAGGTATGGCCGTCTCTTGAGAAAGCCATTGAAGATTCAAGTCTGTTCCTTGTGATCTTCTCAGAAAACTATGCATCTTCCACGTGGTGCCTGGAGGAGCTTGCAAAAATATTACAGTGCTTTAAAAATCAAGGTTGCTTTGTTATGCCGGTGTTCTATAGAGTGGATCCTTCACATGTGAGGAAGCAGTCTGGGAGTTACAAGAAAGCATTTGAAGAACATGAGTGCAAAATAAACATCAACAATCAACAACTGCAAAAGTGGAGGGAGGCTCTTACTCAAGCTGCCAATTTGTCTGGTTGGCATTGTGGCTTCAATAGGAATGAAGCGGAGCTAATTGAAGAAATAGTGAATCGTGTCATACAAAAGTTGGGCCCTAGTTATCAAAGTGAAGATTATCTCGAAGGCTTGATTGGAATTCACAAAAGAATGGCAGTTGTAGAATCATTGTTGGACAAAGGTTCAAACAATAGTGGTTGCCAATTCATTGGAATTTGGGGGATGGGCGGTTTGGGCAAAACAACTCTTGCAAAAGCATTGTTTAACAAATTGCATTTTACATATGAAGGGTCTTGCTTTTTGGCTAATGTAAGGGAAGAATCAAAGAGATATGGAATAGATGCTTTGAGGGAAAAAATTGTTTGGAGGTTATTAGGGGATAAAGAATCTCACATTGGCAATACAATACATCCTTATACCATCAGTAGGCTTGGTCGGAAAAAGGTTTTCATTGTGCTTGATGATGTTGATGATGTTGAACAATTAGAAAATTTAGTTGGAAGACATGAATTTGGATCAGGAAGTAAAATCTTGATAACAACCAGAGATAGGCAAGTGCTTGCTGGTATAAAAGTGGTCGATGTATATGTGCTTGATCGTTTGAATCCTTTTGAAGCTTTTGATCTATTCTCCATCAATGCTTTTAGAAATGACTATGCTGACTTGAAGATAAGAAAGCTAGCACAACAAGTGACTCAATATGCGGATGGAAATCCATTGGCCCTAAAGGTTTTTGCCGCCTTGTTACGTGGCAAAAATCAGGAGGCATGGAAAAACCAATTGGAAAAGCTTCAAAAATTACCTCTTCCAGAAATTAATCATATTCTCAGATTGAGTTTTGAAGAACTTGATGAGGAAACGAAAAATATTTTCTTACATATCGCATGTTTTGTCAATTATTATCATTATGTCAAGGATGCAAAAAAATTCTTAGGTGCATGCGGTTATTCAATTGAGATTGGATTGAAGATTCTTGAAGATAAAGCTCTTTTAGATTTTTACGGAGGAATGATAGGTATGCACAATCTAATAGAAGAAATGGGTAAACAAATTGTTCGTGAAGAATCATTAAAATATCCTACATGGTGCAAGATATTTTGGATTTTTGGGAGAAGTTCTGAAGTATTGAAGGAAAATAGGGGAAGTATTGAAGGCTTGATTATCAACCGTTCAGAAGTTGAAGAGATGTGGGTAATTAATAAAGCCTTTCGTTCAATGCACAATCTGAAGTTTCTTAGGTTTTATGGAAATTTCAATAATCTAAATGCTTCTCGTATGGAGCGTTTGCCAAGAAAGCTCAGGCTATTGGATTGGGTGGGATGCCCTTTAGAGTCCTTGCCCACAACATTCAATGGTGAAAATCTCGTTGAAATAAAGATGAGCAACAACAATTTGACAAAACTTTGGGATGGAGAGCAGAATCTTGCGAATTTAAGCAGAATTGATCTTCATGGATCAAAAGATTTGATTAAGCTCCCAAATTTTTCCAAAGCCATACATCTTGCAGAAGTTCATCTTCAGGGTTGTTTAAAATTGCAAAATGTTCATCCATCTATTTTATCTCTCCATAGCCTTTGTCGTTTATTGCTAAATGACTGCAAAGCCCTTACCAGCCTTACGAGCAAGACCCATCTCAAATCACTGAGTGAATTGGACTTGACAGGATGCTCAGGACTACGTGAATTTTCAGTGACCTCAGAAAATAATCGGTTTCAATTGATGCTTTGCAGAACAGCCATCAATGGTGAGTTGTGCTCATCAAGCGGTTGTCTTAGCAAAATTGACTTTTTGGACCTCGAAAGTTGCGGAGGTGTGACAAGTCTTCACAAATTGTTTGCGATGCACACCCTTCGACGCCTTCATGCTGGTTATTGTAATAAGCTAGCATCAAATCTACGTTCCATATTTGATGAGGTGCCGCGTGCTTTGGGATCTCTATGGCTGGATAATTGTAGTAAATTATATGAAGTGCCTGACAACATCAGCTTCTTGTTGTCATTACATGAGTTGCGTCTCTCAAGGAGCAATATAGAGACCTTGCCTTTAAGCATCAAGCATCTTTCAAGCCTGCGGACTCTTTACTTAGATGGATGCGAAAGGCTTCGGTCTTTACCACAACTCCCTCCCTCTATCCGTACACTGAGCGCCAATGAATGCCTATCCCTTGAGACCTTACATTCACCTTTAATGAGTGAAGGTAGAGAAGGAAAACAATATTATGAATACTTCAATTTCATAAATTGTATGAAGTTGGATGGGCAGTCAATCAAAGCTGTTGAGGCCGTAGTGCTACTTGACATGAATGATAACCAAGCTGACAGAGCTAGTATGGAATATCCGGGAAAAAGTGTTGCAGAATGGTTCATGTATAGGACTACACAGTCTTTGGTGACTGTGGATCTCAGTTCGATTCCACAACCTTGGGATGGCGTTTTCATTTTCTGCGCCGTCATTCCTGCAGGAACACCACGGTCGAGTTTCATTGAAGCCAAATTGTTTATTGATGGTCATCAATGTGCTTCCGTGTTTGAAGGATCGTATTTGACTGATGGGTCCATGTTGTCTGATCATGTTTTTCTTTGGTACAATAGAAAGTCATGTGAAGAAGTACTAAGGAAAATTGAAGAAAAGAAAAGAGAAGCTCAAAGCAACACTTATCATCCATTGCTTCAAATTCAATTCGCACCTCGTGATGATGAAAAACCAGTAGAGATCAAAGAGTGTGGGGTGTGCCCGACATCTGCAGTTGAATATCAAAATTACATCAGACGAATTCAATTGGCATTATTGCATCCACATCGTAGCTCTAATGCAACGCAATCGGCCTCTCGAAAGCGCAAATATCACAGCTCACTTCCATGA 3507 0.4012 MKKEGTGYGGRRVIRVHERQSYSWLWGSISTTTPNTGMTTYGDSAFVPSNGLDQEGRRTKQLNVEDAGCVSRSQRMEAVFRMARTRNFRGEDTRSNFTSHLHEALRRNQIDTYIDYRLEKGDEVWPSLEKAIEDSSLFLVIFSENYASSTWCLEELAKILQCFKNQGCFVMPVFYRVDPSHVRKQSGSYKKAFEEHECKININNQQLQKWREALTQAANLSGWHCGFNRNEAELIEEIVNRVIQKLGPSYQSEDYLEGLIGIHKRMAVVESLLDKGSNNSGCQFIGIWGMGGLGKTTLAKALFNKLHFTYEGSCFLANVREESKRYGIDALREKIVWRLLGDKESHIGNTIHPYTISRLGRKKVFIVLDDVDDVEQLENLVGRHEFGSGSKILITTRDRQVLAGIKVVDVYVLDRLNPFEAFDLFSINAFRNDYADLKIRKLAQQVTQYADGNPLALKVFAALLRGKNQEAWKNQLEKLQKLPLPEINHILRLSFEELDEETKNIFLHIACFVNYYHYVKDAKKFLGACGYSIEIGLKILEDKALLDFYGGMIGMHNLIEEMGKQIVREESLKYPTWCKIFWIFGRSSEVLKENRGSIEGLIINRSEVEEMWVINKAFRSMHNLKFLRFYGNFNNLNASRMERLPRKLRLLDWVGCPLESLPTTFNGENLVEIKMSNNNLTKLWDGEQNLANLSRIDLHGSKDLIKLPNFSKAIHLAEVHLQGCLKLQNVHPSILSLHSLCRLLLNDCKALTSLTSKTHLKSLSELDLTGCSGLREFSVTSENNRFQLMLCRTAINGELCSSSGCLSKIDFLDLESCGGVTSLHKLFAMHTLRRLHAGYCNKLASNLRSIFDEVPRALGSLWLDNCSKLYEVPDNISFLLSLHELRLSRSNIETLPLSIKHLSSLRTLYLDGCERLRSLPQLPPSIRTLSANECLSLETLHSPLMSEGREGKQYYEYFNFINCMKLDGQSIKAVEAVVLLDMNDNQADRASMEYPGKSVAEWFMYRTTQSLVTVDLSSIPQPWDGVFIFCAVIPAGTPRSSFIEAKLFIDGHQCASVFEGSYLTDGSMLSDHVFLWYNRKSCEEVLRKIEEKKREAQSNTYHPLLQIQFAPRDDEKPVEIKECGVCPTSAVEYQNYIRRIQLALLHPHRSSNATQSASRKRKYHSSLP 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1606g00001 1168 Gene3D - 416 499 IPR042197 -
Pral1606g00001 1168 PRINTS Disease resistance protein signature 358 372 - -
Pral1606g00001 1168 PRINTS Disease resistance protein signature 284 299 - -
Pral1606g00001 1168 PRINTS Disease resistance protein signature 758 774 - -
Pral1606g00001 1168 PRINTS Disease resistance protein signature 450 464 - -
Pral1606g00001 1168 Pfam Leucine Rich Repeat 669 688 IPR011713 -
Pral1606g00001 1168 Coils Coil 1079 1099 - -
Pral1606g00001 1168 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 87 789 IPR044974 GO:0006952
Pral1606g00001 1168 Pfam TIR domain 87 260 IPR000157 GO:0007165
Pral1606g00001 1168 SUPERFAMILY L domain-like 555 982 - -
Pral1606g00001 1168 ProSiteProfiles TIR domain profile. 80 246 IPR000157 GO:0007165
Pral1606g00001 1168 SUPERFAMILY Toll/Interleukin receptor TIR domain 88 223 IPR035897 -
Pral1606g00001 1168 Gene3D - 86 253 IPR035897 -
Pral1606g00001 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 509 IPR027417 -
Pral1606g00001 1168 SMART till_3 87 220 IPR000157 GO:0007165
Pral1606g00001 1168 Pfam NB-ARC domain 269 492 IPR002182 GO:0043531
Pral1606g00001 1168 Gene3D - 255 410 IPR027417 -
Pral1606g00001 1168 Gene3D Ribonuclease Inhibitor 597 784 IPR032675 -
Pral1606g00001 1168 Gene3D Ribonuclease Inhibitor 785 968 IPR032675 -
Pral1606g00001 1168 FunFam Disease resistance protein (TIR-NBS-LRR class) 78 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1606g00001 Pral-Chr1606 9892 20168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1606g00001 71 947 WRKY Transcription Factor Family AT4G12020 29.268 2.27e-77 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1606g00001 - - pcin:129290874 987.638