Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral15g00004 ATGGATTTCGACGATGATTATTGCTTCGGCGGCGGGGAGGAGGAGGACGAGGCCTTGTACAGCGACGGTGGTAACGACGAGGATGATTACGATTTCATCGATAATGCTTCTGATAGTTCTGATGTTGCTCCCTTGAGTCGTCACCAGGTGCAAAACTATACAGTCTTGAGTGAAAGCGACATTCGTCAACGCCAGGAGGATGAGATTATGAAGATATCCACTGTGCTATCCATTTCAAAGTTTGCAGCTCGTATACTGCTTCGTCACTATAATTGGAATGCTGGTAAAATACATGATGAATGGTTTGCAGATGAAAAGAAAGTTCGCAGTGCTCTTGGCTTGTTGGAGAAACCTCTTATGGAATATAAAGATTCTAGTGAGATGACTTGTGGGATCTGTTTTGATACCTATCCTGGTGCTGAGATGCTTGATGCTGGTTGTGGCCATCCTTTTTGTAGCTCGTGTTGGGAAGGCTATGTCAGTGTAGCCATCAACGGCGGTCCTGGATGTTTGTCATTGCGGTGTCCCGATCCATCATGTGGTGCTGCTGTTGGTGAAGATGTTATCAATTTATTGGCTTCTGATGAAGAGAAGGAGAAGTACTCTGCTTATTTTATCAGGTCTTATATTGAGGACAACAAAAAGACCAAATGGTGCCCTGCTCCTGGATGTGATTTTGCTGTGGACTTTGCTTCTGGTAGTGGAAGCTATGATGTTACGTGCAAGTGCTCATGCAGTTTTTGCTGGAATTGCACTGAAGAAGCACATAGGCCTGTTGATTGTGATACTGTCGCCAAATGGATATTGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATATTGGCCAATTCGAAACCTTGTCCAAGCTGCAAACGGCCAATTGAGAAAAACCAAGGCTGTATGCATATGACTTGCACACCACCCTGCAAGTATGAGTTTTGCTGGCTTTGCCTTGGTCCATGGTCTGAGCATGGTGAGACGACAGGTGGTTTTTATGCATGTAATCGTTATGAAGAAGCAAAAGCAGATAAAGAGTTTCAAGAGGCAGAACAGCAGAGAGAGATAATCAAGAACTCTCTTGAAAGATATTATCACTATTATGAAAGATGGGCAACCAATCAATCATCCAGACATAAAGCTCTTGCAGACCTAGAGCAAATGCAAACTGTGCACCTTGAGAAGCTCAGTGACCTGCAGTGTCAGCCAGAATCACAGCTAAAATTCATCACAGAGGCCTGGTTACAGATCGTTGAATGCAGACGTGTTTTGAAATGGACATATGCCTATGGCTACTATATACCTGAGAAGGAGAAAGCAAAGAGAGAGTTTTTTGAATACTTGCAAGGTGAAGCAGAGGCTGGATTGGAACGACTTCATCAGTGCGCTGAGAAGGAACTGGAGGTATATCTCACGGAAAAGAATCCAGAAAGAGATTTTAACTGTTTCCGCACTAAACTTTCTGGACTAACCAGCGTGACAAGGACTTTCTTTGAGAATTTAGTAAAAGCTTTGGAGAACGGTTTATCAGACGTGAACTCTCATGTTCCAACCAGCAGAAGTGCAAGCTCAAAGAGCTTAGGAAGGAGCTACAGTGGGAAAAAGGGGAGGGACGAGCCTATAACGCCCAGATCAAATTATTCTGGAATTGGTGGATGA 1659 0.437 MDFDDDYCFGGGEEEDEALYSDGGNDEDDYDFIDNASDSSDVAPLSRHQVQNYTVLSESDIRQRQEDEIMKISTVLSISKFAARILLRHYNWNAGKIHDEWFADEKKVRSALGLLEKPLMEYKDSSEMTCGICFDTYPGAEMLDAGCGHPFCSSCWEGYVSVAINGGPGCLSLRCPDPSCGAAVGEDVINLLASDEEKEKYSAYFIRSYIEDNKKTKWCPAPGCDFAVDFASGSGSYDVTCKCSCSFCWNCTEEAHRPVDCDTVAKWILKNSAESENMNWILANSKPCPSCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGPWSEHGETTGGFYACNRYEEAKADKEFQEAEQQREIIKNSLERYYHYYERWATNQSSRHKALADLEQMQTVHLEKLSDLQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYIPEKEKAKREFFEYLQGEAEAGLERLHQCAEKELEVYLTEKNPERDFNCFRTKLSGLTSVTRTFFENLVKALENGLSDVNSHVPTSRSASSKSLGRSYSGKKGRDEPITPRSNYSGIGG 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral15g00004 552 CDD BRcat_RBR_ANKIB1 206 270 - -
Pral15g00004 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 210 IPR013083 -
Pral15g00004 552 SUPERFAMILY RING/U-box 124 211 - -
Pral15g00004 552 ProSiteProfiles TRIAD supradomain profile. 126 339 IPR044066 -
Pral15g00004 552 Gene3D - 257 512 - -
Pral15g00004 552 MobiDBLite consensus disorder prediction 1 27 - -
Pral15g00004 552 ProSiteProfiles Zinc finger RING-type profile. 130 176 IPR001841 -
Pral15g00004 552 CDD Rcat_RBR_ARI7-like 284 338 - -
Pral15g00004 552 FunFam RBR-type E3 ubiquitin transferase 124 213 - -
Pral15g00004 552 Pfam Ariadne domain 349 509 IPR045840 -
Pral15g00004 552 Pfam IBR domain, a half RING-finger domain 278 326 IPR002867 GO:0008270
Pral15g00004 552 Pfam IBR domain, a half RING-finger domain 199 261 IPR002867 GO:0008270
Pral15g00004 552 SMART ibrneu5 199 261 IPR002867 GO:0008270
Pral15g00004 552 SMART ibrneu5 265 335 IPR002867 GO:0008270
Pral15g00004 552 SUPERFAMILY RING/U-box 280 328 - -
Pral15g00004 552 SUPERFAMILY RING/U-box 199 268 - -
Pral15g00004 552 Coils Coil 340 360 - -
Pral15g00004 552 MobiDBLite consensus disorder prediction 512 530 - -
Pral15g00004 552 MobiDBLite consensus disorder prediction 512 552 - -
Pral15g00004 552 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 427 IPR031127 GO:0004842|GO:0016567
Pral15g00004 552 FunFam RBR-type E3 ubiquitin transferase 262 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral15g00004 Pral-Chr15 48965 58396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral15g00004 1 533 ARIADNE family AT1G65430 69.794 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral15g00004 K11968 - cit:102630454 863.988