Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1595g00008 ATGGCGGAGGAGGAATCGCCTTCGTCTCCTACTGTATTGAGCATGGAGGGTCTTGACGATGTGGAAGACTACGTTTCGGCATCTGAACCGGAGGGTTTGGCAAGGGAAACATACCATCATTTATATGAGCTTATGCAGAATGGCAATGTGGCATTTCGGGATGACCGTATGGAAGAGGCGATCAACTTTTACTCTAGAGCAAATAGCATCAGGACTGGTGATCCAGTCATACTCAATAACCGAAGTGCGGCTTATATCAGAATTAGCCAATTTTTAAAACACAGACCTCCATCAGCTTCAGAATATAGTCCGTTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCGAAGTACTTCAGTAAAATCATACCTTTTGAAGGCCAATGCTCTTTTTCTGCTGGAGAAATATGAGATGGCTCGGGATGTTATTCTTTCGGGCCTTCAAGTTGATCCATATAGTAATTCTCTACGGGTGTCTCTTTCAAACCTGGAAAGAGCATTGGCTAGCTTGGCGAGGATGAGTAAACATGGACAGCCAGAGCGCTCTGATGACTTTGATTGCACTCTTTGCCTCAAGTTGCTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGGTCATGTCTATTTCAGTCAATGGATCGTGGCAACAGGTGCCCGTTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCGTGAGTGTGACATTGAAAAACATTATACAAAAGAATTTTCCGGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTGAGCAACCTGGGCCTAGATTTGATCCCTCTCTTTGTCATGGATGTTGTCATTCCATGCCAAAAGTTTCCACTCCATATATTTGAACCCCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATAATCGATTCTGAAGCAGATTCCCTGGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGTGAACCACTTCCGGATGGACGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCGCATCATCCGATCATGGGATCAAGATGGGTATCGTGTTGCAGAGGTCGAATGGATTCAGGATATTATGCCATCGGAAGGTAGAGAGAGAGAAGATTTACAGGAAATAACAAATAATGCGGCAGAAAGTGCTCGATCATGGATCAGAAGGGCTAAAGAAGCAGCAGGACAAGATCAAAGACGACTCGAGAGACTGTTGAATGTTGAAGTGATGATGCCCCCGCCACAAGACCCTGAGCGCTTCAGTTTCTGGGTGCTTTTCGCCTTCTCTGCAATAAAATATATATGCTACCTCTTCTTGCTACCTTATCAAACCGGAGGCCTTCAGAAAAACTTGATCTCCTGCGCTTGA 1437 0.4412 MAEEESPSSPTVLSMEGLDDVEDYVSASEPEGLARETYHHLYELMQNGNVAFRDDRMEEAINFYSRANSIRTGDPVILNNRSAAYIRISQFLKHRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIRSTSVKSYLLKANALFLLEKYEMARDVILSGLQVDPYSNSLRVSLSNLERALASLARMSKHGQPERSDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFPEEYAERKQENDSLSNLGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSEADSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPSEGREREDLQEITNNAAESARSWIRRAKEAAGQDQRRLERLLNVEVMMPPPQDPERFSFWVLFAFSAIKYICYLFLLPYQTGGLQKNLISCA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1595g00008 478 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Pral1595g00008 478 SUPERFAMILY TPR-like 42 179 IPR011990 GO:0005515
Pral1595g00008 478 SUPERFAMILY PUA domain-like 283 449 IPR015947 -
Pral1595g00008 478 ProSiteProfiles Lon N-terminal domain profile. 280 478 IPR003111 -
Pral1595g00008 478 Gene3D - 281 383 IPR046336 -
Pral1595g00008 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 278 IPR013083 -
Pral1595g00008 478 PANTHER RING FINGER PROTEIN 127 28 448 - -
Pral1595g00008 478 Gene3D Tetratricopeptide repeat domain 39 178 IPR011990 GO:0005515
Pral1595g00008 478 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 416 IPR003111 -
Pral1595g00008 478 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Pral1595g00008 478 SUPERFAMILY RING/U-box 194 262 - -
Pral1595g00008 478 SMART ring_2 199 236 IPR001841 -
Pral1595g00008 478 SMART lon_5 282 472 IPR003111 -
Pral1595g00008 478 CDD RING-HC_LONFs_rpt2 196 240 - -
Pral1595g00008 478 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1595g00008 Pral-Chr1595 20877 30049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1595g00008 190 240 C3H Transcription Factor Family AT1G74990 37.037 1.89e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1595g00008 - - lja:Lj0g3v0312049.1 720.694