Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1594g00001 ATGGGAATCGAGAGGGGAAGCCTCAGGGGCTTTCGTAGCGGTGGCTGGACCGTGCCGCCGAAGCCCTGTGACTCCTGCAAATCCTCGGCTGCTGTGGTTTTTTGCCGAGCCGACTCGGCTTTTCTGTGCATGCTCTGTGACAACAAGATTCACTCTGCCAATAAGCTTGCGTCGCGGCATGAGCGTGTGTGGATGTGCGAGGTTTGCGAGCAAGCCCCTGCCTCCGTCACGTGCAAGGCCGACGCCGCCGCGCTCTGCCTCACGTGCGATTCGGATATCCACTCCGCCAACCCGCTGGCTCGCCGTCACGAGCGTGTCCCTGTGGAGCCCTTCTTCGATGCCGCCGACTCTGTGGCGAAATCCTCCGCTGCTGCCTTTAACTTTCTGGTTCCAAATGATAACGGAATCGGATCCGATGGATTCCCTCAGGAAGAGTCCGAATCAGCATCATGGCTAATTTCCAATCCGAATTTCAACCCGAAGATCGTGGATGTTCCGGATATCAAATCGGGCGATATGTTTTTTCCGGACATGGAGTATCCATTCCTGGATTTCGATTACTCAAACTCCTTCGATCAGAATAACAATAACAGAGCGGGTAATAACGATAGCGTAGTTCCAGTTCAAGCTCCGGTTATGAATCACACAGAGAGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCTTCAATTAGCTATCCAGCGCAGTCATTTAGCCGCCAAAGCGTGTCATCTTCTTCGGTTGATGTGGGAGTGGTCCCGGACGGAGGAAACACGGCGTCAGAAATATCGTTCCCGTTCGGGAGGAACATAAGTAACAGTTCGGAATCAAGCGGGATCATATCGGCGGGCAATTCCACAAACCAATCGGGAAGTTCGGTGAGTGGTATGAACAGGGAAGCTCGCGTTTTGAGATACAGGGAGAAGAGGAAGAACCGCAAGTTTGAGAAAACCATACGGTACGCATCGCGAAAGGCTTACGCAGAAACTCGGCCGAGGATCAAAGGGCGGTTCGCCAAACGGACCGAGATGGAGTCGGATTTCGACCGGCTGTTCAGCTCGGTAGACCCCACCTCGGATCTAATGCTGGATACTCAGTACGGCGTCGTCCCCTCGTTTTAA 1125 0.5333 MGIERGSLRGFRSGGWTVPPKPCDSCKSSAAVVFCRADSAFLCMLCDNKIHSANKLASRHERVWMCEVCEQAPASVTCKADAAALCLTCDSDIHSANPLARRHERVPVEPFFDAADSVAKSSAAAFNFLVPNDNGIGSDGFPQEESESASWLISNPNFNPKIVDVPDIKSGDMFFPDMEYPFLDFDYSNSFDQNNNNRAGNNDSVVPVQAPVMNHTESCFDIDFCRSKLSSISYPAQSFSRQSVSSSSVDVGVVPDGGNTASEISFPFGRNISNSSESSGIISAGNSTNQSGSSVSGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESDFDRLFSSVDPTSDLMLDTQYGVVPSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1594g00001 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 355 IPR045281 GO:0009909
Pral1594g00001 374 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Pral1594g00001 374 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Pral1594g00001 374 SMART bboxneu5 18 65 IPR000315 GO:0008270
Pral1594g00001 374 SMART bboxneu5 66 108 IPR000315 GO:0008270
Pral1594g00001 374 CDD Bbox1_BBX-like 66 108 - -
Pral1594g00001 374 CDD Bbox1_BBX-like 22 65 - -
Pral1594g00001 374 MobiDBLite consensus disorder prediction 279 299 - -
Pral1594g00001 374 Pfam CCT motif 300 342 IPR010402 GO:0005515
Pral1594g00001 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Pral1594g00001 374 MobiDBLite consensus disorder prediction 279 298 - -
Pral1594g00001 374 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Pral1594g00001 374 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1594g00001 Pral-Chr1594 2552 4049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1594g00001 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.823 5.44e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral1594g00001 zf-B_box 2.1e-06 No_clan