Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1587g00008 ATGGGTATCAAGATGCAGAGCCAGCACCATCCTGTGGCTTTGAGGTTCCATGAGCACGGGAGTAAAAGAAAATACACTTTCATTCAGGCTAAAAGAGCTTGGCTCCCAAAGTTTCTGCTGCTGTGGATCATGCTGATGATGCTATTCAGTTGGTCCATCTACAATGGTATGGATGCTGATAATAAAGTTAGGAGGAGAGAGGTTCTGGGTAGCCTCTGTGAGCAAAGGGCTAGGATGCTGCAAGATCAATTTAGTGTTAGTGTTAACCATGTCCATGCCCTAGCCATTCTGGTTTCAACCTTCCACTACTACAGAAACCCATCCGCAATTGATCAGGAAACTTTTGCGGAGTATACTGCCAGAACAGCATTTGAGCGGCCATTACTCAATGGGGTGGCCTATGCACAAAGGGTAGTTGACACTGAAAGAGAAAACTTTGAGAGGCAACACGGATGGGTGATAAAGACGATGGAAAGAGAGGCTTCCCCAGTTCGAGATGAGTATGCACCGGTGATATTTGCCCAGGAAACTCTCTCTTATCTTAAGTCTCTTGATATGATGTCAGGAGAGGAGGACCGAGAAAACATTCTGAGGGCTAGGGCCACTGGGAAAGCTGTACTGACTAGCCCATTCAGGCTGTTGGATTCTCATCATCTTGGTGTGGTGTTGACATTCCCTGTGTACAAAGCCAAGCTCTCCCGAGAGCCAACTATGAAAGAGCGTGTAGAGGCAACTGCGGGATATGTTGGAGGGTCCTTTGATGTTGAATCCCTAGTGGAGAATTTACTTGGGCAGCTTGCTGGTAACCAAGCAATTTTGGTTCATGTGTATGATATCACAAACTCTACTAACCCGCTAATCATGTATGGCAACCAATATGAAGAAGGTGATAAGTCTCTTGTACATAAAAGCAAACTTGATTTTGGAGATCCTTACAGGAAACATCAGATGATATGTAGGTATCATCAGAAGGCACCAACATCTTGGACAGCGCTTACCACGGCATTTTTATTCTTTGTGATTGGTTTGTTAGTGGGATATATTTTGTATGGTGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCATGAGATGCAGGAACTAAAAGTTCGAGCTGAAGCTGCTGATGTTGCCAAATCCCAGTTTTTAGCGACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATCCTAGGAATGCTTGCTCTGCTTCTAGATACGGAATTGAGTTCAACTCAACGAGATTATGCTCAGACTGCTCAAGCGTGTGGAAAAGCACTGATAGCATTGATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTAGAAGCAGTTCCATTTGACCTGCGTTCCATACTTGATGATGTCCTTTCTTTATTCTCTGAGAAGTCTAGACACAAAGGTTTAGAGTTGGCGGTCTTTGTCTCTGATAAAGTTCCAGACATTGTTATGGGAGATCCTGGGAGGTTCAGACAAATTATAACCAATCTAGTTGGCAACTCTGTCAAATTCACTGAACGAGGGCACATATTTGTTAAGGTTCATCTAGCTGAAAATATAAGTGCCACAATGAATGGAAAATCTGAGACATATCTAAATGGAGGATCAGATGACATTGTGCATATGGCTGGTGGTTATCAGTCCAAAACTCTCAGTGGATGTGAAGCAGCTGATGAAAGGAACTGTTGGGATAATTTTAAGCATCTGATTGATGATGAAGAATTTTGCTTTGATGCATCAAGTGAAAAGATGACCACTATTCAAGTTTCTGAGCAAGTCACTCTGATGGTCTGCGTAGAGGATACTGGTATTGGGATTCCCTTTTCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGTGGGACTGGTATTGGATTGAGCATCAGTAAGTGTTTGGTTGAATTAATGGGTGGCCAAATAAGCTTCGTAAGCCGACCCCAGGTTGGGAGCACATTTTCCTTCGCTGCAAATTTTGGTACATATAAGAAAAGTTCAATCGGTGATGCGAAGAAACATAATGTGGAAGATCTACCTTCTAGTTTTAGAGGACTGAAAGCCACAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTCGATACCATCTGAAGAGACTTGGGATAATAGCTAAAGTTGCTAATAACATTAACAAGGCTGTTGCTTTATGCGGGAAGAACGGTTCATTGACATCTGGAGTGTTCCTGCCGGATATAATTTTGGTTGAGAAGGACTCGTGGATATCTGGAGAAGATGGAAGCTTCAATCTTAGGCAACTAGACTGGAAGCAGAACGGACATACAATTAAGTTGCCCAAATTGATCCTTCTTGCAACCAATATTAGTAATGCCGAGTTTGATAAAGCTAAGGCTGCTGGTTTTGCTGATACTGTGATCATGAAGCCTCTGAGAGCTAGTATGGTAGCTGCTTGTCTTCAGCAGGTTCTTGGTGTGGGTAAGAAGAGACAACAAGGAAAAGACATGCCTAATGGTTCCGCTTTTCTTCGGGGCCTTCTGTGTGGAAAGAAAATTTTGGTGGTTGATGACAATATGGTGAACCGGAGGGTTGCTGCAGGTGCATTGAAAAAGTTTGGAGCTGATGTGAAGTGTGTTGAAAGTGGCAAAGCGGCGCTTGAGTTGCTTCAACTGCCTCATAATTTTGATGCCTGCTTCATGGACATCCAAATGCCGGAAATGGACGGATTTGAAGCAACACGACGAATCCGGCTGATGGAAAGCAAGGCAAATGAGCAGGCAAATGGTGGAGGTAATGAAGAAAATGCCTCTGAAAGCGAGTGGCATTTGCCAATATTAGCCATGACAGCTGATGTAATTCATGCTACCTACGATGAGTGCCTGAAATGTGGTATGGATGGATACGTGTCCAAGCCCTTTGAGGAAGAGAATCTCTATCAAGCAGTTGCAAAGTTCTTCAAATCCAAGCCTATCTCAGACTCATGA 3006 0.4348 MGIKMQSQHHPVALRFHEQXGSKRKYTFIQAKRAWLPKFLLLWIMLMMLFSWSIYNGMDADNKVRRREVLGSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLNGVAYAQRVVDTERENFERQHGWVIKTMEREASPVRDEYAPVIFAQETLSYLKSLDMMSGEEDRENILRARATGKAVLTSPFRLLDSHHLGVVLTFPVYKAKLSREPTMKERVEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDITNSTNPLIMYGNQYEEGDKSLVHKSKLDFGDPYRKHQMICRYHQKAPTSWTALTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENISATMNGKSETYLNGGSDDIVHMAGGYQSKTLSGCEAADERNCWDNFKHLIDDEEFCFDASSEKMTTIQVSEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQISFVSRPQVGSTFSFAANFGTYKKSSIGDAKKHNVEDLPSSFRGLKATVVDGKPVRAAVTRYHLKRLGIIAKVANNINKAVALCGKNGSLTSGVFLPDIILVEKDSWISGEDGSFNLRQLDWKQNGHTIKLPKLILLATNISNAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGVGKKRQQGKDMPNGSAFLRGLLCGKKILVVDDNMVNRRVAAGALKKFGADVKCVESGKAALELLQLPHNFDACFMDIQMPEMDGFEATRRIRLMESKANEQANGGGNEENASESEWHLPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSKPISDS 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1587g00008 1002 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155|GO:0007165
Pral1587g00008 1002 FunFam Histidine kinase 4 111 326 - -
Pral1587g00008 1002 Gene3D CHASE domain 111 326 IPR042240 -
Pral1587g00008 1002 SMART HKATPase_4 492 677 IPR003594 -
Pral1587g00008 1002 CDD HisKA 380 441 IPR003661 GO:0000155|GO:0007165
Pral1587g00008 1002 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155|GO:0007165
Pral1587g00008 1002 Pfam CHASE domain 110 290 IPR006189 -
Pral1587g00008 1002 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
Pral1587g00008 1002 CDD HATPase_EvgS-ArcB-TorS-like 497 675 - -
Pral1587g00008 1002 Gene3D - 444 680 IPR036890 -
Pral1587g00008 1002 SUPERFAMILY CheY-like 857 994 IPR011006 -
Pral1587g00008 1002 SMART CHASE_2 107 292 IPR006189 -
Pral1587g00008 1002 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 492 673 IPR003594 -
Pral1587g00008 1002 SUPERFAMILY CheY-like 698 833 IPR011006 -
Pral1587g00008 1002 Gene3D - 356 443 - -
Pral1587g00008 1002 PANTHER TWO-COMPONENT HISTIDINE KINASE 28 991 - -
Pral1587g00008 1002 ProSiteProfiles Response regulatory domain profile. 859 994 IPR001789 GO:0000160
Pral1587g00008 1002 FunFam Histidine kinase 3 853 998 - -
Pral1587g00008 1002 SMART REC_2 858 990 IPR001789 GO:0000160
Pral1587g00008 1002 CDD REC_hyHK_CKI1_RcsC-like 860 990 - -
Pral1587g00008 1002 Gene3D - 58 110 - -
Pral1587g00008 1002 Coils Coil 430 450 - -
Pral1587g00008 1002 ProSiteProfiles Response regulatory domain profile. 702 832 IPR001789 GO:0000160
Pral1587g00008 1002 Gene3D - 854 1000 - -
Pral1587g00008 1002 Gene3D - 696 836 - -
Pral1587g00008 1002 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 671 IPR036890 -
Pral1587g00008 1002 FunFam Histidine kinase 4 352 443 - -
Pral1587g00008 1002 Pfam Response regulator receiver domain 860 990 IPR001789 GO:0000160
Pral1587g00008 1002 ProSiteProfiles Histidine kinase domain profile. 387 677 IPR005467 -
Pral1587g00008 1002 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Pral1587g00008 1002 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Pral1587g00008 1002 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310|GO:0016772
Pral1587g00008 1002 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Pral1587g00008 1002 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1587g00008 Pral-Chr1587 71983 78970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1587g00008 21 1002 Histidine Kinase Gene Family AT2G01830 71.746 0.0 1426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral1587g00008 HATPase_c 1.8e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1587g00008 K14489 - gmx:100813204 1643.25