Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1587g00006 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCGAAGGTCTGGTGTTACTATTGCGATCGGGAGTTCGATGACGAGAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAAACTCTCCACTGCTGGCGGCATGGCCATTCACGTGCTCCAGGTTCATAAAGAAAACGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACAGATATTGAAATATATGGGATGCAAGGGATTCCACCAGACGTCTTGGCCGCTCATTATGGAGATGAAGAGGATGAAGCTCCATCAAAAACAGCCAAAGTAGATATCCCATCAACTCAGCTTGTAGGTGGAGTCGTCCCAGCACCATTAGGAGTGGGATATCCTCCTCAGTCAACCTTGGGTACTATGCCACCTATTTATAATCCTGCAGTACCTGTGCCGCCGGCCACTTGGCCAGTTCCACCTCGACCTCAGCCTTGGTACCCACAACCTCCATCTGTTTCCATTCCTCCTTCTGCCCCATATGTACAGCAGCCATTATTTCCTGTTCAGAATGTGAGGCCACCTTTACCATCAACCGCTTCTCCTGTCCTTCCAACTTCTCAAGTTGCTCCTCCTGGTTTGCCTCCAACATCTGCTCCAGTTTCACAGCCTTTGTTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTTCTGCTCCATCGCTCCCTAGCAGTGCTCCATCTGCATTGCCTCCAAGTGTCCCTGCTGATGCTTATTCAAGTGCCAACACAACTTTGACAAATAATTATCAAGTACTAGGGGTTCCAGGAGGTATATCAAACAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGCAACTCAACCTGCCACTAATGAGGTCTATTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTACCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCGATTGACGCAGCCATAGACAAGAGGATACTTGAAAGCAGGCTAGCAGGTCGAATGGCTTTTTAG 1110 0.4748 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEEDEAPSKTAKVDIPSTQLVGGVVPAPLGVGYPPQSTLGTMPPIYNPAVPVPPATWPVPPRPQPWYPQPPSVSIPPSAPYVQQPLFPVQNVRPPLPSTASPVLPTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFSAPSLPSSAPSALPPSVPADAYSSANTTLTNNYQVLGVPGGISNNSHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1587g00006 369 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Pral1587g00006 369 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Pral1587g00006 369 PANTHER ZINC FINGER PROTEIN 207 1 369 - -
Pral1587g00006 369 SMART c2h2final6 12 35 IPR013087 -
Pral1587g00006 369 SMART c2h2final6 36 59 IPR013087 -
Pral1587g00006 369 MobiDBLite consensus disorder prediction 234 254 - -
Pral1587g00006 369 Gene3D Classic Zinc Finger 1 66 - -
Pral1587g00006 369 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Pral1587g00006 369 MobiDBLite consensus disorder prediction 283 309 - -
Pral1587g00006 369 CDD SUF4-like 13 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1587g00006 Pral-Chr1587 47523 53106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1587g00006 1 349 C2H2 Transcription Factor Family AT1G30970 67.313 2.37e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1587g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1587g00006 - - gmx:100819009 566.614