Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1587g00005 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCGAAGGTCTGGTGTTACTATTGCGATCGGGAGTTCGATGACGAGAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAAACTCTCCACTGCTGGCGGCATGGCCATTCACGTGCTCCAGGTTCATAAAGAAAACGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACAGATATTGAAATATATGGGATGCAAGGGATTCCACCAGACGTCTTGGCCGCTCATTATGGAGATGAAGAGGATGAAGCTCCATCAAAAACAGCCAAAGTAGATATCCCATCAACTCAGCTTGTAGGTGGAGTCGTCCCAGCACCATTAGGAGTGGGATATCCTCCTCAGTCAACCTTGGGTACTATGCCACCTATTTATAATCCTGCAGTACCTGTGCCGCCGGCCACTTGGCCAGTTCCACCTCGACCTCAGCCTTGGTACCCACAACCTCCATCTGTTTCCATTCCTCCTTCTGCCCCATATGTACAGCAGCCATTATTTCCTGTTCAGAATGTGAGGCCACCTTTACCATCAACCGCTTCTCCTGTCCTTCCAACTTCTCAAGTTGCTCCTCCTGGTTTGCCTCCAACATCTGCTCCAGTTTCACAGCCTTTGTTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTTCTGCTCCATCGCTCCCTAGCAGTGCTCCATCTGCATTGCCTCCAAGTGTCCCTGCTGATGCTTATTCAAGTGCCAACACAACTTTGACAAATAATTATCAAGTACTAGGGGTTCCAGGAGGTATATCAAACAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGCAACTCAACCTGCCACTAATGAGGTCTATTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTACCAAAATACCAGGTGCATGATGAAACTAGCCAGGTAAGTCATACTACCTCTTTAATAGAAGGAGTTGCTTTCACATCTAACCAGATGGGTAGGCTTTATGCTTATTTTCAGATTCAGTTGTTTACGCATTGTTTGCTATTGATAGAGGTACATTCTGTATGA 1167 0.4619 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEEDEAPSKTAKVDIPSTQLVGGVVPAPLGVGYPPQSTLGTMPPIYNPAVPVPPATWPVPPRPQPWYPQPPSVSIPPSAPYVQQPLFPVQNVRPPLPSTASPVLPTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFSAPSLPSSAPSALPPSVPADAYSSANTTLTNNYQVLGVPGGISNNSHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQVSHTTSLIEGVAFTSNQMGRLYAYFQIQLFTHCLLLIEVHSV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1587g00005 388 Gene3D Classic Zinc Finger 1 66 - -
Pral1587g00005 388 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Pral1587g00005 388 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Pral1587g00005 388 SMART c2h2final6 12 35 IPR013087 -
Pral1587g00005 388 SMART c2h2final6 36 59 IPR013087 -
Pral1587g00005 388 MobiDBLite consensus disorder prediction 234 254 - -
Pral1587g00005 388 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Pral1587g00005 388 MobiDBLite consensus disorder prediction 283 309 - -
Pral1587g00005 388 CDD SUF4-like 13 92 - -
Pral1587g00005 388 PANTHER ZINC FINGER PROTEIN 207 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1587g00005 Pral-Chr1587 47523 53106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1587g00005 1 373 C2H2 Transcription Factor Family AT1G30970 64.948 2.43e-150 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1587g00005 None None None