Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1585g00007 ATGGTGCGTATGAGTTTGATTAAGAACTTGCATGATGGCACGGACCGTTGGAGTATAATAGTGAGGGTTATGCGCAAGTGGAACATCTACCAAAAAAATACTCCTGGTGATGTTTTTGGCGTGACCATGCTGTTATTGGATGAGGATGGTACTACCATTCAAGCGACTGTGCTAAATAGGAATATCATGGCCAGATACAAAACTAATATTGTGGAAGGAAATACTTACTTATTCGCTAACTTCATTGTGTCACAAAATGGAAATCAATACAGAGCTTCAACACACCCTTTCAAGATCACTTTCACTCCACAAACTTTCTTTGCAGACCACAACGTATCACTTCCAGCATATTCATATTCATTCTTCCCCATCTCTGAGATTTTGAAGGCCACTCCAGAGCACCACGTTCAACACCTTTTTGATGTGATGGCATTTGTGAAGGCCATGGGTACGCTTGAAGAGTTCCGTAGGGATAATGAAACTAAGTCTAAACTTCGCATGATATTGACTGATGCCCGGGAGAATGATATTGAGTGCGTACTATTTGATGACTGTGCAATTGATGCTTTTATGGCTCAGTTACAGAACACAGAAACACCTGTTGTTGGCCTATTCAATCTCGCTAGAATTGGTTTCTCCGAAGATGGTGTTGGTGAGAGTTTTGTTGTTAAATGCACGGTTAAGAAGCTAGAAACATATCACGGATGGACCTATGATGGATGTTCAAAGTGTGCTGCGAAAACCAGACTTGAGGGTACATCAGTTATGTGCCCAATCTGCAAGAAAGTTCCAGATGCCATAGAACCAAAGCTTCGCATTCACTACATGGTGGAAGACGATACTGGATCTGCTTCATTAATCTTTTGGGATAAACAAGCTATTCAATTGATTAACAAGAGCACCACAGAGTTGAAACTTCTCATGCAACAGGATAATCGCCCAGCATATGATTTTCCGGATGAGCTGGAAGATCCTGTGGGAAAGGTTCTACTAGTGAAAATGAAGCTCAATGAGTACAACAAAAAACATCCAACATCTGCAATTAGTGTAGGCCAGTTTACTATTTGTGAAGACCTCATGGACCAGTTTATGGATGCAAATGTTGAAGTCGGTGAAGTTAATGCCCGTAATGCGAACAATGACAGCCAGGATGTTCCTTCGTTAGTTGAAATCACTGATAATCAGGATAGCCATGAAAATGTGTCACCCGTTATCCCTCAGCCTGCTGCACCACAGAACAATGAACTTGAAGACGTCACTCTTGTCAAGCTTGCTAACCAGGTCACACCAGTAACTAATAGAGTGAGGAGAAGGTCGGCGATCAAGAGAAATGTTGGAGTGGATGTTTCTGCCAGTTCTTCACAGAGCTTGCCTACTAAAGATTCAGAAGCAGAAAGAGTTTATAAGGTCATCAAGAAGGAGAAGTAA 1428 0.4174 MVRMSLIKNLHDGTDRWSIIVRVMRKWNIYQKNTPGDVFGVTMLLLDEDGTTIQATVLNRNIMARYKTNIVEGNTYLFANFIVSQNGNQYRASTHPFKITFTPQTFFADHNVSLPAYSYSFFPISEILKATPEHHVQHLFDVMAFVKAMGTLEEFRRDNETKSKLRMILTDARENDIECVLFDDCAIDAFMAQLQNTETPVVGLFNLARIGFSEDGVGESFVVKCTVKKLETYHGWTYDGCSKCAAKTRLEGTSVMCPICKKVPDAIEPKLRIHYMVEDDTGSASLIFWDKQAIQLINKSTTELKLLMQQDNRPAYDFPDELEDPVGKVLLVKMKLNEYNKKHPTSAISVGQFTICEDLMDQFMDANVEVGEVNARNANNDSQDVPSLVEITDNQDSHENVSPVIPQPAAPQNNELEDVTLVKLANQVTPVTNRVRRRSAIKRNVGVDVSASSSQSLPTKDSEAERVYKVIKKEK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1585g00007 475 MobiDBLite consensus disorder prediction 446 475 - -
Pral1585g00007 475 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Pral1585g00007 475 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Pral1585g00007 475 CDD RPA1_DBD_C 210 340 IPR047192 -
Pral1585g00007 475 Gene3D - 3 108 IPR012340 -
Pral1585g00007 475 SUPERFAMILY Nucleic acid-binding proteins 215 342 IPR012340 -
Pral1585g00007 475 PANTHER OS03G0429900 PROTEIN 220 403 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral1585g00007 475 CDD RPA1_DBD_A_like 18 105 - -
Pral1585g00007 475 SUPERFAMILY Nucleic acid-binding proteins 118 204 IPR012340 -
Pral1585g00007 475 MobiDBLite consensus disorder prediction 446 461 - -
Pral1585g00007 475 Gene3D - 205 361 IPR012340 -
Pral1585g00007 475 Pfam Replication factor-A C terminal domain 221 341 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1585g00007 Pral-Chr1585 52145 54677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1585g00007 3 227 Core DNA Replication Machinery Family AT5G61000 23.237 5.64e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1585g00007 - - pcin:129317387 366.311