LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1584g00004	ATGAGATCAGTAGCCGTTGCTGTCAACGGCGGCTCCAGCGCTGGCAGGGGTAGCCGGCGAGCCGTCCAGTGGGCGGTGGAGAATCTTATGCCTCAAGCCGATAGGTTCATCTTAGTTCATGTTATGCCCCGAATCGCTTCAATCCCAACACCATCTGGAGAGTGTATCCCTGTTATGGATCTAGATGCCCATGTGGCAACAGCTTATATTCAGGATGTAAAGGAGAAGTTCGAGCAAATCTTTACTCAATTGAAGAAACTCTGCAAAACAAGCACAGTTGAAACCTTGTTGCTGGAAGATGACGATCCTGCAACTGCACTACTTAGATATATATCAGAATCAGAGATTCAAATATTAGTGTTGGGAACTGGCTCTTCAAATTTTATAACAAGGAAGCTAAAAGGACCAGGGATACCAACAACTGTTCTAAGATGTGCTCCTGACACTTGTGATGTATATCTTGTAGCTAGAGATAGAATTATATCAAAATTAGGCGATTCTTCATCTTCACCCTCACGTGAGAGCAGCTCAAGGTACTCCGTGTCTACACAAGGGAATCCAGGACATGTCGATGCTCAAATAACAGGACTTAATTCTTCCACAACGGGACTTGAATTTCTTGCAAACAGAATCCCATCAATGTCAGTCTCGGAGTGGAGTTTCATAGGTTCTCAAACATCTAGTGCTGCAAATTCTCTTAAAAATCTCACTATAAACGAAGGCAATCTAGAAAGCTTTAGAGATGATGCTGAAACTGCAAGCATCCACTCATTTGATTCCACGGCTTCTGCACAAATTGAACAACCAGTCTTGCAAGAAATAGAGCAGCTGCAGCTGGAGTTACGGAATACTGTTGCCATGTATAAACAGTTTTGTGAAGAGTTGGCTCTCTCTCAAAGTAAGGTTCATTTACTTTCAGCTGAATATCTTGAAGAATCAAGAAGAGTAAATGATTCCCTGAAAAGAGAGGAGGCTTTGAGAAAGATTGCTGCTGAAGAAAAAGAAAAGTATTTGAAAGTCATGGAGGAACTTGAGGAGGCAAAAATGAAGTTTGCAAAAGAGTCGTATGAAAGGCAGATGGCTGAACTTAATGTCCTCAAAGAATCTGTAGAAAGGAAGCGGATAATTGATACATTGCTCTCGAGTGACAAGAGGTACAGAAAGTACACTATGGACGAAATTAATGAAGCAACAGACAACTTTTCTAAGGATCTTTTGATTGGTGAAGGAGGTTATGGGAAGGTCTATAAGTGCAGGCTCGATCACACTACAGTAGCTGTAAAAGTTCTGCACCAGGATGCAATTAACAAGAAAGAGGAGTTTCTGAAGGAGGTTGAGATTCTAAGTCAGCTACACCATCCACACATGGTTTTGCTGCTAGGAGCTTGTCCTGAAACTGGCTGTCTTGTTTATGAATACCTGGAAAATGGAAGCCTTGATGACTACCTTTTCAGTAACAGTGGGAAACCCCCACTTCCTTGGTTCATTCGATTCCGTATAGTTTTTGAAGTGGCTTGTGGGTTATCGTTCTTGCATAATTCAACGCCTGAGCCAATTGTTCATCGAGATATGAAACCAGGAAATATCTTGCTGGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGATTGGCTAAATGCCTTTCAGACGTCATACCTGACAATATAACTGAGTACAGAGAATCTATGCTTGCTGGTACTCTGCATTACATGGATCCAGAGTATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCATTGGGAGTTATAACTCTTCAATTGATAACCGCTCGCCATGCACGCGGACTCATTTTGGCTGTAGAAAATGCGGTTAAAAAAGGCTCCCTCTCTCATATTTTAGATAAATCAGCTGGAGATTGGCCACCAACCGAAACGGAAGAGTTGGCTCAAATTGCCCTGAGATGCTCGGCACTGAGATGCAGAGATAGACCAGATCTTGATACTGAAGTTCTTCCACTGCTCAAAAGAATCAATGATGTGGCAAATGCTACTGCAAAAGTGGGAAGAAATAGTAGCATTTGCCCACCAAGCCAATATTATTGTCCAATCCTTCAGGAAATAATGGATGATCCACACATCGCTGCGGATGGTTTTACCTACGAGTATAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTATCACCTGTAACTAAGCATACAATGCAGCATTCTACATTGATTCCAAACCATACGTTACGTTCGGCCATTCAGGAGTGGAGATCACGACAGAAGTGA	2268	0.4228	MRSVAVAVNGGSSAGRGSRRAVQWAVENLMPQADRFILVHVMPRIASIPTPSGECIPVMDLDAHVATAYIQDVKEKFEQIFTQLKKLCKTSTVETLLLEDDDPATALLRYISESEIQILVLGTGSSNFITRKLKGPGIPTTVLRCAPDTCDVYLVARDRIISKLGDSSSSPSRESSSRYSVSTQGNPGHVDAQITGLNSSTTGLEFLANRIPSMSVSEWSFIGSQTSSAANSLKNLTINEGNLESFRDDAETASIHSFDSTASAQIEQPVLQEIEQLQLELRNTVAMYKQFCEELALSQSKVHLLSAEYLEESRRVNDSLKREEALRKIAAEEKEKYLKVMEELEEAKMKFAKESYERQMAELNVLKESVERKRIIDTLLSSDKRYRKYTMDEINEATDNFSKDLLIGEGGYGKVYKCRLDHTTVAVKVLHQDAINKKEEFLKEVEILSQLHHPHMVLLLGACPETGCLVYEYLENGSLDDYLFSNSGKPPLPWFIRFRIVFEVACGLSFLHNSTPEPIVHRDMKPGNILLDRNYVSKISDVGLAKCLSDVIPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYALGVITLQLITARHARGLILAVENAVKKGSLSHILDKSAGDWPPTETEELAQIALRCSALRCRDRPDLDTEVLPLLKRINDVANATAKVGRNSSICPPSQYYCPILQEIMDDPHIAADGFTYEYRAIKAWLSKHNVSPVTKHTMQHSTLIPNHTLRSAIQEWRSRQK	755

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral1584g00004	755	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	519	531	IPR008271	GO:0004672\|GO:0006468
Pral1584g00004	755	SUPERFAMILY	RING/U-box	685	753	-	-
Pral1584g00004	755	Pfam	Protein tyrosine and serine/threonine kinase	406	657	IPR001245	GO:0004672\|GO:0006468
Pral1584g00004	755	MobiDBLite	consensus disorder prediction	165	194	-	-
Pral1584g00004	755	Gene3D	Transferase(Phosphotransferase) domain 1	474	682	-	-
Pral1584g00004	755	SMART	serkin_6	401	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pral1584g00004	755	Gene3D	HUPs	1	155	IPR014729	-
Pral1584g00004	755	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	1	155	-	-
Pral1584g00004	755	CDD	RING-Ubox_WDSUB1-like	686	740	-	-
Pral1584g00004	755	CDD	STK_N	3	157	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1584g00004	Pral-Chr1584	40687	46148	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1584g00004	3	755	Plant U-box Gene Family	AT5G57035	54.746	0.0	836

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pral1584g00004		PK_Tyr_Ser-Thr	2.1e-40	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1584g00004	-		-	gmx:100805896	1045.42

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