Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1582g00002 ATGGATTCAACTTTAGAAGGTGCCACGCTCGATCCATCTAAGTGCAGCAAGTTGAGTATGGAAGAAAAAAGAGAACTTATCTATCAGATTTCTAAGTCCCAGGGTGCTTCAGAGACGTTGCAGTCATGGAGCCGACAAGAAATTTTGAAAATCCTGTGTGCAGAGATGGGAAAAGAAAGGAAGTACACTGGCTTGACAAAGTTGAAAATCATAGAAAATCTTTTAAAAATTGTCTCTGAAAAGAAATCAGGAAACCAGGAAATTACAACAGATCTTGAACCGCTTTCTCCTCATGCAAATGAGCAGAAACCAGCTAAAAGGCGGAGGAAAACAGAGAATCCGTCTCGGCTGCCTCTTCCAGCAAACAGTGGTCTAGTCACTAATGGTGATGGAGATTTGGGCAGTAGTAGCACCACATACTGTAAGAATTCAGCTTGCAAAGCTACCCTAAGTCAAGCAGATGCATTTTGCAAAAGATGCTCGTGCTGCATTTGTCATCAATATGATGACAACAAAGATCCTAGCCTGTGGTTAATATGTAACTCTGACGCTCCATTTCGTGGTGTTTCTTGTGGCTTGTCATGCCATCTTGAATGTGCTTTAAAACATGATGGTTCCGGCATTCCCAAAAATGGAGTTCGTCCCAAGCTTGATGGGGATTTCTGCTGTGTCTCATGTGGGAAAGTGAATGATTTGCTCGGATGTTGTAGAAAACAACTGTCAATGGCAAAGTGTACCAGACGTGTGGACATTCTTTGCTATCGTGTCTTCTTGACCGAAAAACTTTTACAAGGGACTGAAAAGTATAAACAAATTTATGAAATAATTGATGAGGCTGTCAAGAAACTTGAAACTGAGGTTGGCCCATTAACTAGCTCACCAGCGAAGATTGGTAGGGGAATTGTAAACAGACTTTCATCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGCTTTGGAATTGCTGGATTCATCACTTTCTGAAGTAGTCTTGCCTCCATCACCCGGTCCGGCATATCAAGATACAAAATTGGTCGCTTCAGATATGGTGGGATTTGAAGATATCGCTGCAACATCGCTCACTGTAGTTTTGGGTTCAGAAAACCCATCTGGGGAAAATATTGTTGGTTACAATTTGTGGCATCGTGCGGCTCATGATGTGGACTATCCCTTGGACTCAACTCGCACGTTGTATCTACCAGACAGAAAGTTCACTATCAGGGATCTAATTCCAGCCACAGAATACGTCTTCAAAGTTGTTGCCTTCAATCATTTGAGGGAGTTGAGCATGTGTGAAGTCCGTGTTTTGACTGAGCAAGGCGATGAAGAAGCGCCCAACTGCTCAACAACGGAAAGAATTCAAAGCCCAGTAACAAACTGTAGCAGCCTTTCCAATCCCTCATCAGTAGAAGATGAAACTAATAACAGTAACCCAGATTGTGACCAGACCGATAACCGGGTGGAGAATCATCTTACCGATCAAAAGGACACTGACAAGCTTGCTTCAGGAATTTTATCCAGTGACCTCACTAACTGTTCCAACACTGGTGAAGGTAGACTTCCGGCAAATGCTGATTCCTCATCAGACAAGGAACATGCTGTAGGAAAGATTGGCCCTTCTTTACCTAGTTCTGATGTGTTGAAGCTTGGCAAAAAACACTCACCAGAGGAGCAAGTCACTGAGGACATGATCACTGATAATGGGCTTAATCCGCTGGCTCAGGCTAGGAGGGACTGCGCAGCAGGTAGGCCAGAGGAAGGCCTTCCCATCACTCCATGCAAGCTGGAAATGCTTAAGGATGGGCCAGGAAGAAAGGGGAGGTCTAAATCGAGTTGCAAGGCCAAGGATCAAGAAAATGGGTCTGGGAAGAGACAATGCCCTCAAGATGGAATCAAATCAAAGAAGAGAAATGGGGAAAGGCAACAAGTTGAGGAGTGTGATGCAGAGGGGTTTTCTTCTGATGGAGATTTTGAGTATTATGTGAAGGTGATTAGAAGATTAGAGTGTGAAGGACATATAGAGAAGACCTTTAGGCAGAAATTTCTGACTTGGTACAGCTTTAGAGCAACAACCCAAGAAGTTAGGGTTGTGAAAGTATATATTGATACCTTCATTGGAGATCCAACATCTCTTGCAGAGCAGCTTGTGGACACATTCTCAGACTGCATATCAAGCAAGAGAACATCTACGGTGCCACCTGGCTTCTGCATGAAGCTTTGGCATTAG 2226 0.438 MDSTLEGATLDPSKCSKLSMEEKRELIYQISKSQGASETLQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGNQEITTDLEPLSPHANEQKPAKRRRKTENPSRLPLPANSGLVTNGDGDLGSSSTTYCKNSACKATLSQADAFCKRCSCCICHQYDDNKDPSLWLICNSDAPFRGVSCGLSCHLECALKHDGSGIPKNGVRPKLDGDFCCVSCGKVNDLLGCCRKQLSMAKCTRRVDILCYRVFLTEKLLQGTEKYKQIYEIIDEAVKKLETEVGPLTSSPAKIGRGIVNRLSSGPEVQKLCGSALELLDSSLSEVVLPPSPGPAYQDTKLVASDMVGFEDIAATSLTVVLGSENPSGENIVGYNLWHRAAHDVDYPLDSTRTLYLPDRKFTIRDLIPATEYVFKVVAFNHLRELSMCEVRVLTEQGDEEAPNCSTTERIQSPVTNCSSLSNPSSVEDETNNSNPDCDQTDNRVENHLTDQKDTDKLASGILSSDLTNCSNTGEGRLPANADSSSDKEHAVGKIGPSLPSSDVLKLGKKHSPEEQVTEDMITDNGLNPLAQARRDCAAGRPEEGLPITPCKLEMLKDGPGRKGRSKSSCKAKDQENGSGKRQCPQDGIKSKKRNGERQQVEECDAEGFSSDGDFEYYVKVIRRLECEGHIEKTFRQKFLTWYSFRATTQEVRVVKVYIDTFIGDPTSLAEQLVDTFSDCISSKRTSTVPPGFCMKLWH 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1582g00002 741 MobiDBLite consensus disorder prediction 88 128 - -
Pral1582g00002 741 MobiDBLite consensus disorder prediction 442 482 - -
Pral1582g00002 741 MobiDBLite consensus disorder prediction 591 641 - -
Pral1582g00002 741 Gene3D Immunoglobulins 349 459 IPR013783 -
Pral1582g00002 741 MobiDBLite consensus disorder prediction 499 522 - -
Pral1582g00002 741 MobiDBLite consensus disorder prediction 439 571 - -
Pral1582g00002 741 CDD FN3 350 423 IPR003961 GO:0005515
Pral1582g00002 741 MobiDBLite consensus disorder prediction 483 497 - -
Pral1582g00002 741 ProSiteProfiles Fibronectin type-III domain profile. 345 441 IPR003961 GO:0005515
Pral1582g00002 741 MobiDBLite consensus disorder prediction 598 641 - -
Pral1582g00002 741 Pfam PHD - plant homeodomain finger protein 141 259 IPR032881 -
Pral1582g00002 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 8 741 IPR044514 GO:0010048|GO:0040029
Pral1582g00002 741 SUPERFAMILY Fibronectin type III 356 425 IPR036116 GO:0005515
Pral1582g00002 741 CDD PHD_VIN3_plant 161 226 - -
Pral1582g00002 741 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1582g00002 Pral-Chr1582 21946 26535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1582g00002 1 475 PHD Gene Family AT4G30200 53.465 1.78e-160 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1582g00002 - - gmx:100794721 1029.62