Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1579g00001 ATGGAGCTGGCTTTGAGCTTGGGAGATGCAACAAAGGGGTTCCCCATACTGGACAAGGCCTCGAGAATGCCCAACAAGGAAGCTGGTTTCTGCATAGCAATTGGTCAAGGTCTCCCTGAGAAAGCGTCAGAGCAGAATAACGCGAGTCCCACAGAAGACATCCAAGATGAGAGAAGAGCCTCCTCAGATCCGCCTCATCAGCTAGACCTTCTCCCCTTCTCGCCGGTTCCTCGACCCCACCCAGCTTCCCATCTTCGGATTCCTTGGCTTTCCGATTCATTGGGATCTCAACGTTTCTCACCGGATGGAGGAGCGAAGGCATTGGACGTCAACCATATGCCGGCAGTAGAAGCGGAGGAGGCAGACGACAGTACTCCACTGTCTTTGTCTCCTAATAGTGTGTCGTCGTTTCACATGGACTTCTACACAAGGAATGGCAATGCAGGAAGGATGAGCAAGAGAGACCTTAAGGTTAAAGGTGACAGAGATAGTTCTAGGGCCAGTGACGATGATGAAAATGGGTCGACTTGCAAGAAACTCAGGCTTTCCAAACAGCAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACACTACTCTTAATCCTAAGCAGAAACTGGTTCTGGCAAGACAGTTAAATCTTCGTCCTCGCCAAGTAGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACCGAAGTAGATTGTGAGTATCTGAAGAGATGCTGTGAGACGTTGACAGAAGAGAATGGGAGGTTGCAGAAGGAACTGCAGGAACTAAGGGCTTTAAAATCGTCTCAGCCATTTTACATGCAGCTACCGCCGACCACTCTCACAATGTGTCCCTCTTGCGAGAGGGTAGCCACTAACTCATCATCCTCTGCCTCCGTTGCTAAGGCCAACAATGCTTCCCAGGCCTCCTTGCTCATGTCTCTCTCCAACCCCAGAACAGTCCATCCCTTTGATCATAATAATGCCCAGCCTCATCCCACTCCTTCCTCATGA 1014 0.497 MELALSLGDATKGFPILDKASRMPNKEAGFCIAIGQGLPEKASEQNNASPTEDIQDERRASSDPPHQLDLLPFSPVPRPHPASHLRIPWLSDSLGSQRFSPDGGAKALDVNHMPAVEAEEADDSTPLSLSPNSVSSFHMDFYTRNGNAGRMSKRDLKVKGDRDSSRASDDDENGSTCKKLRLSKQQSAFLEESFKEHTTLNPKQKLVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENGRLQKELQELRALKSSQPFYMQLPPTTLTMCPSCERVATNSSSSASVAKANNASQASLLMSLSNPRTVHPFDHNNAQPHPTPSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1579g00001 337 Pfam Homeobox associated leucine zipper 233 267 IPR003106 GO:0006355|GO:0043565
Pral1579g00001 337 SUPERFAMILY Homeodomain-like 170 234 IPR009057 -
Pral1579g00001 337 SMART HOX_1 175 237 IPR001356 GO:0003677
Pral1579g00001 337 ProSiteProfiles 'Homeobox' domain profile. 173 233 IPR001356 GO:0003677
Pral1579g00001 337 MobiDBLite consensus disorder prediction 150 177 - -
Pral1579g00001 337 MobiDBLite consensus disorder prediction 144 177 - -
Pral1579g00001 337 MobiDBLite consensus disorder prediction 41 84 - -
Pral1579g00001 337 FunFam Homeobox-leucine zipper protein HAT22 181 227 - -
Pral1579g00001 337 SMART halz 233 276 IPR003106 GO:0006355|GO:0043565
Pral1579g00001 337 ProSitePatterns 'Homeobox' domain signature. 208 231 IPR017970 GO:0000981|GO:0006355
Pral1579g00001 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 307 - -
Pral1579g00001 337 CDD homeodomain 178 234 IPR001356 GO:0003677
Pral1579g00001 337 Gene3D - 181 231 - -
Pral1579g00001 337 MobiDBLite consensus disorder prediction 318 337 - -
Pral1579g00001 337 Pfam Homeodomain 178 231 IPR001356 GO:0003677
Pral1579g00001 337 Coils Coil 246 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1579g00001 Pral-Chr1579 18462 20048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1579g00001 165 324 Homeobox Transcription Factor Family AT4G37790 65.644 2.15e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1579g00001 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1579g00001 K09338 - vvi:100265773 399.823