Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1578g00001 ATGAGCGATCATCTGGTTTTGTATGTTGACCGTCTTGTGCGGCCCCCCGCCGCTGACCCGGTCTCGCATCCGGCTGAGGTCCCGTCTGAGCCGGCTCCGCCTGTAGATGCGGCTGGACCTTCTGGTTCTTCCCCAGCGGTTGATGATGATGCAAGGTCTGAACATGATGAGGATTGTAATGAGGACAAGCCGCTGATCCAGATAGCTGAGTGTCGCATTTGTCAAGAGGAGGATAGCGTTAAGAATTTGGAGACTCCTTGTGCATGTAGCGGCAGCCTAAAGTTTGCTCACAGAAAGTGCGTTCAACATTGGTGCAATGAAAAGGGAGATATAATTTGTGAGATATGTCATCAGCCGTATCAACCGGGTTATACTGCCCCACCACCTCGTCCCCAGCCTGATGAAACTACCATTGACATAGGTGGGGGCTGGACAATCTCTGGGACACCTTTGGACTTGCGTGATCCTCGACTGTTGGCAATTGCTGAGGCAGAACGCCAATTCTTGGAAGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCAGCTTTTTGTCGCTCTGCTGCTCTAATTCTGATGGCTCTATTACTTTTGCGGCATGCACTTTCAGTTACAGATTCTGATGCTGATGATGATCCATCTACTTTTTTCTCCCTTTTCTTGCTTAGAGCAGCTGGATTTCTTTTACCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCGGCAGCACTGGCAGCTACCCAAGTTGCTTTTGTATTGCAATCTGGACAGCGGAGGGGTCTGCAATTTGCGATCGCACCAGCAGGACCCACACTGGATTCACAACCGGAGCATGTGTAG 873 0.5006 MSDHLVLYVDRLVRPPAADPVSHPAEVPSEPAPPVDAAGPSGSSPAVDDDARSEHDEDCNEDKPLIQIAECRICQEEDSVKNLETPCACSGSLKFAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRPQPDETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDSDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPAGPTLDSQPEHV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1578g00001 290 MobiDBLite consensus disorder prediction 16 60 - -
Pral1578g00001 290 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Pral1578g00001 290 SMART ringv_2 70 117 IPR011016 GO:0008270
Pral1578g00001 290 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
Pral1578g00001 290 SUPERFAMILY RING/U-box 70 121 - -
Pral1578g00001 290 FunFam RING/FYVE/PHD zinc finger protein 59 127 - -
Pral1578g00001 290 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Pral1578g00001 290 Coils Coil 159 179 - -
Pral1578g00001 290 CDD RING_CH-C4HC3_MARCH 71 117 - -
Pral1578g00001 290 Pfam Protein of unknown function (DUF3675) 122 240 IPR022143 -
Pral1578g00001 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 126 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1578g00001 Pral-Chr1578 17118 20390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1578g00001 70 117 C3H Transcription Factor Family AT2G37950 41.176 2.67e-06 45.4