Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1576g00156 | ATGAATTTTGAGGCCCCAGTCAGTCGCGGAAGAAGATCCAGCAAGAAGCCAAAATTGGTGGAGAATATGGCAATCCCTTTGATTGAAGCAGTGGACGTGGAAGCTTTCAATTGCACACCCATCTGGGATAAGGGCACAAGCAAATCCAATGCAATCTCTGTCGAGCAGTACACCCACGATCGAGACCTCCACCTCTCGATCACGGCTTCTCTAGGTAAAGCAAAGCCTTCCCTGAAAACCTTCATCGACCTTTCCGACGGCGATGACGATGACGAGGTGAGAATTCTTAGGTTTCAGCCTAAAAACACTCCTTTCGGGAAACGAAGGAAGTCCAGGGATCCAACTGTTCCCACTTTTGAAACAGGGGAATCTTCCAGTTCTCAACCATTTGTTTGCGAAATCTGTGCTGATGCCAAGACTGCCAACGAGTCGTTTAGCATCAGTGGTTGCTCTCACGCTTACTGTATAGGCTGTGTGATTATGTATGTCGCAACAAAGCTACAAGAAAATGTTGTGAACATAAGATGTCCAGTGCCAGCGTGTGGAGGACTGTTGGAGCCTGAGGATTGCCGCGGGATTCTTCCTCCGGAAGTGTTCAATAGGTGGGGTGATGCCTTGTGTGAGGCTGTCATACCGGCGGAAGAGAAGTTTTACTGCCCATATAAAGACTGTTCTGCGCTGCTCATTGATGATGGAGGAGAAAGGACTATCACAGAGTCGGAGTGTCCGAACTGTGGGAGACTCTTCTGTGCCAAGTGTATGGTGCCGTGGCATTCAGGAATTGATTGCGATGAGTTTCAGAAATTGGGCAAGGACGAGAGAGAGGAGGAAGATATAATGCTGATGCAACTTGCTCAGAACCATAAGTGGAGGAGGTGTCCCCACTGTAGGTTCTACGTCGAAAAGTCCTCTGGGTGTCTCTATATGAAATGCAGGTGTGGAATTGCCTTCTGCTATAACTGCGGGACGATTTCAAGAGATAATTCCCATTATTGCCATACTTGTAGACGCTAG | 1014 | 0.4803 | MNFEAPVSRGRRSSKKPKLVENMAIPLIEAVDVEAFNCTPIWDKGTSKSNAISVEQYTHDRDLHLSITASLGKAKPSLKTFIDLSDGDDDDEVRILRFQPKNTPFGKRRKSRDPTVPTFETGESSSSQPFVCEICADAKTANESFSISGCSHAYCIGCVIMYVATKLQENVVNIRCPVPACGGLLEPEDCRGILPPEVFNRWGDALCEAVIPAEEKFYCPYKDCSALLIDDGGERTITESECPNCGRLFCAKCMVPWHSGIDCDEFQKLGKDEREEEDIMLMQLAQNHKWRRCPHCRFYVEKSSGCLYMKCRCGIAFCYNCGTISRDNSHYCHTCRR | 337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1576g00156 | 337 | ProSiteProfiles | TRIAD supradomain profile. | 128 | 337 | IPR044066 | - | |
| Pral1576g00156 | 337 | Gene3D | - | 217 | 264 | - | - | |
| Pral1576g00156 | 337 | ProSitePatterns | Zinc finger RING-type signature. | 150 | 159 | IPR017907 | - | |
| Pral1576g00156 | 337 | SMART | ibrneu5 | 200 | 263 | IPR002867 | GO:0008270 | |
| Pral1576g00156 | 337 | SMART | ibrneu5 | 273 | 335 | IPR002867 | GO:0008270 | |
| Pral1576g00156 | 337 | ProSiteProfiles | Zinc finger RING-type profile. | 132 | 178 | IPR001841 | - | |
| Pral1576g00156 | 337 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 214 | IPR013083 | - | |
| Pral1576g00156 | 337 | SUPERFAMILY | RING/U-box | 207 | 268 | - | - | |
| Pral1576g00156 | 337 | CDD | BRcat_RBR_unk | 215 | 266 | - | - | |
| Pral1576g00156 | 337 | FunFam | RBR-type E3 ubiquitin transferase | 127 | 213 | - | - | |
| Pral1576g00156 | 337 | SUPERFAMILY | RING/U-box | 126 | 212 | - | - | |
| Pral1576g00156 | 337 | Gene3D | - | 265 | 337 | - | - | |
| Pral1576g00156 | 337 | CDD | Rcat_RBR_unk | 289 | 323 | - | - | |
| Pral1576g00156 | 337 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 89 | 334 | IPR031127 | GO:0004842|GO:0016567 | |
| Pral1576g00156 | 337 | Pfam | IBR domain, a half RING-finger domain | 213 | 263 | IPR002867 | GO:0008270 | |
| Pral1576g00156 | 337 | SUPERFAMILY | RING/U-box | 274 | 336 | - | - | |
| Pral1576g00156 | 337 | MobiDBLite | consensus disorder prediction | 103 | 126 | - | - | |
| Pral1576g00156 | 337 | FunFam | RBR-type E3 ubiquitin transferase | 265 | 337 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1576g00156 | Pral-Chr1576 | 844629 | 846628 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral1576g00156 | 132 | 323 | C3H Transcription Factor Family | AT2G19610 | 31.343 | 4.03e-28 | 111 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral1576g00156 | K11975 | - | qsa:O6P43_021976 | 424.091 |