Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00149 ATGGCTCCCTCTTCCGCCCCCGCCCTCTCTTTCTTCCTCATCTCTCTCCTCCTCCTGCATCTCTCTCCTGTTTCTTCCCGCCCCACCTTCCAGCCTTCCTCCTCCCAGTTCGTTTCCTCCGTCTCCCAAGTCCTCCGCGTCTTGAACCAGGTCGTCTCCATCCTGTCCCGCTTCGCTGATTTCTCCGGAGATTCTCGCCTCTCCCATGCAATTTCCGACTGCCTCGACTTGCTCGACTTGTCTTCTGACGACCTTTCCTTCTCCGCCTCCGCTTCTCAATCTCCCCGAGGCAAGCATAACGGCACCGGGAACCTGAGCTCCGATTTGCGGACATGGTTGAGCGCCGCACTGGCCAATCCAGAGACATGCATGGACGGTTTTGAAGGCACCAACAGCATTGTGAGCGGTCTCATATCCAGTGGGCTGGGACAGGTGAGCTCGCTGCTGCAGGATCTGCTGGCGCAGGTGCACCCTGTTTCGGACCGTTCCTGGAGCGGCAAGAACCGGTTTCCTTCGTGGATTAAACCTGGGGACCGCAAGCTCCTGCAGACCAATCAGTTGCCAGTGGACGTGGTGGTGGCCGCGGATGGGACTGGAAATTACACAAAGGTGATGGATGCAGTGCTTGCAGCTCCCGACTATAGCATGAAACGCTATGTCATATACGTGAAGAGGGGTTTGTACACGGAGAACGTGGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATTGGTGACGGTATGGATGCCACCATTATCTCCGGCAACCGTAGTTTCGTCGATGGTTGGACCACCTTCCGCACTGCTACCTTTGCTGTCAGCGGGAGAGGGTTTATAGCACGAGACATAGCGTTCCAGAACACTGCAGGCCCCGAGAAGCACCAGGCAGTGGCACTGAGATCCGACTCCGACCTCTCTGTGTACTACCGATGCGGCATCTATGGATACCAAGACAGCCTCTACACCCACACCATGCGCCAGTTCTACAGAGAATGCAAGATCACCGGCACAGTGGACTTCATATTCGGCGACGCCACCGCCGTCTTCCAAAACTGCCAGCTGCTGGCAAAGAAGGGCCTGGCGAGCCAGAAGAACACGATCACGGCTCAAGGTCGAAAAGACCCCAACGAGCCCTCAGGGTTCTCGTTCCAGTTCTGCAACGTGTCCGCAGATTGGGACCTGCTACCCTCAGTGAACTCGACCCAGACGTACCTGGGGAGGCCGTGGAAGACCTACTCAAGAACGGTGTTCATGCAATCGTACATGAGTGAAGCGCTGAGGCCGGAAGGGTGGCTGGAGTGGAACGGGGACTTCGCGCTGGACACGTTGTTCTACGCGGAGTTCCAGAATTACGGGGCAGGAGCGGCACTGGAGAAGCGAGTCAAATGGGGAGGGTACAGAGCGCTGAATGATTCGAGGCAGGCCAGCAACTTCACGGTGGCTCAGTTTATTGAGGGCAATCTTTGGTTACCTTCAACGGGCGTCACTTACACCGCCGGCTTAGGGGTTTAA 1512 0.5655 MAPSSAPALSFFLISLLLLHLSPVSSRPTFQPSSSQFVSSVSQVLRVLNQVVSILSRFADFSGDSRLSHAISDCLDLLDLSSDDLSFSASASQSPRGKHNGTGNLSSDLRTWLSAALANPETCMDGFEGTNSIVSGLISSGLGQVSSLLQDLLAQVHPVSDRSWSGKNRFPSWIKPGDRKLLQTNQLPVDVVVAADGTGNYTKVMDAVLAAPDYSMKRYVIYVKRGLYTENVEIKKKKWNLMMIGDGMDATIISGNRSFVDGWTTFRTATFAVSGRGFIARDIAFQNTAGPEKHQAVALRSDSDLSVYYRCGIYGYQDSLYTHTMRQFYRECKITGTVDFIFGDATAVFQNCQLLAKKGLASQKNTITAQGRKDPNEPSGFSFQFCNVSADWDLLPSVNSTQTYLGRPWKTYSRTVFMQSYMSEALRPEGWLEWNGDFALDTLFYAEFQNYGAGAALEKRVKWGGYRALNDSRQASNFTVAQFIEGNLWLPSTGVTYTAGLGV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00149 503 SMART PMEI_2 19 155 IPR006501 GO:0004857
Pral1576g00149 503 Gene3D - 185 501 IPR012334 -
Pral1576g00149 503 Pfam Plant invertase/pectin methylesterase inhibitor 48 135 IPR006501 GO:0004857
Pral1576g00149 503 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 157 IPR035513 -
Pral1576g00149 503 FunFam Pectinesterase 184 501 - -
Pral1576g00149 503 CDD PMEI-like_4 45 160 - -
Pral1576g00149 503 ProSitePatterns Pectinesterase signature 2. 334 343 IPR033131 -
Pral1576g00149 503 PANTHER PECTINESTERASE 48 491 - -
Pral1576g00149 503 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 148 IPR035513 -
Pral1576g00149 503 SUPERFAMILY Pectin lyase-like 188 500 IPR011050 -
Pral1576g00149 503 Pfam Pectinesterase 190 487 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00149 Pral-Chr1576 812576 815301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00149 9 501 Carbohydrate Esterase AT3G43270 62.305 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00149 K01051 - gmx:100777500 701.049