Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00108 ATGGCGCACGTTACTCAACTTCCCTGCGACTGTGATGGTGTCTGTATGATCTGCAAGGCGATGCCGGCGGACGAAGAGAAGTTGACGTGCAAAACCTGCTTGACCCAATGGCATGTTAGCTGTCTCTCCAATCCTCTGGCCACCATGGCGGAGGCGGTTCAGTGGGAATGCCCCGATTGTTCTACTCCGCCCTCCGATATTCCTCCTATGACTATTGGCAAAGCCGTAGTCGACGGCTCTGGCGACTTGATGGCTGCGATACGGGCGATCGAGGCTGACGCTTCTCTAATGGAGCGGGAGAAGGCCAAGAAGCGTCAGAAACTCTTGAGTGGAAAGGCCGCGTCGGAAGACGACGAAGGTGGCTTGGAGAAGGCAGAAGGCCAAGGGAATGATGTGTTGGATATTCTCAGCGGGACTTTAAACTGTTCCTTCTGTATGCTGCTACCCGAGAGGCCCGTCACGACACCTTGCGGGCACAATTTCTGTCTAAAATGCTTCCAGAAATGGATTGGGCAAGGAAAACTAACATGTGCAAAGTGCCGTAGCAATATCCCCTCCAAAATGGCAAGCCAGCCTCGTATAAATTCTGCATTAGTTATTGCTATTCGTATGGCAAAAGTATCCAATAACATTGGTTCTGGAGAAATTTCTAAGGCTTACCATTTTGTGCATAACCAAGATAGACCAGAGAAGGCATATACAACAGAGCGGGCCCGGAGGAATGGAAAAGCAAATGCAGCAAGTGGAAAGATTTTTGTAACTGTGCCTCAGGATCATTTTGGTCCAATCCCCGCTGAGAATGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGCGCATGTTGGGAAGATAGGCTTGAATGCCGACAATGGGGTGTCCACTTCCCTCATGTTAGTGGTATCGCTGGACAGTCAAACTATGGTGCGCAGTCAGTAGTTCTTTCTGGCGGTTATGTTGATGATGAGGATCATGGGGAATACTTTCTTTACACAGGAAGTGGCGGTAGAGACCTGAGCGGTAATAGAAGAACGAACAGAGTGCAATCGTTTGATCAAAAGTTTGATAAGTCTAATTTAGCTCTCGAAGTCAGCTGTTTAAAAGGTTATCCGGTTCGAGTGGTGAGATCTCACAAAGATAAACACTCTTCCTATGCCCCCGAGAAAGGGTTACGGTATGACGGTGTGTATAGAATCGAGAAGTGCTGGCAAAAATTGGGATTGCAGGGATTCAAAGTTTGCCGATATTTATTTGTTAGATGTGATAATGAACCTGCTCCATGGACGAGTGATTGTCATGGTGATCGCCCGAGACACTTGCCAGAAATTTCCGAGATGGAAAAGGCTATCGGCATAATTGAACGAAAGGAGAATCCATCATGGGATTTTGACGAGGAAGAATCTTGCTGGAAGTGGAAGAAACCACCACCACGCAGTCAAAGGCCCGTAAAAAATATGAATCCCGGGGAGGGAAAAAGGTCGAGGAGAGAGACAAGAAAAACCCAAAATATGTCAATCGGGGAAAGATTGCTGAAAGAATTTGGTTGCCCTATTTGCAACCAAGTTATGGTTTCTCCAGTTACGACACCCTGTGCTCATAATTTCTGCAAGTCGTGCTTGGAGGGGGCATTCGCGGGTCAGTCTTTTGTGACAGACAGAAGCCGGGGTGGAAGATCACTTCGGTCTCGAAAAAATGTGATGAAATGTCCTTCTTGCCCCACTGACATCGCTGATTTTCTTCAGAACCTCCAGGTTAATACGGAGTTGAAGGGTGTAATTGAATCGCTGAAAGCTGAAGCTGAAGAAAATGGAGATTCGGTGGAGCCCAGTGAGGATGCAGATGGAGCAGAGGAAGCCTGTGATGATACGGGTTCTGCTTCAGCTGGGGATGAGGAAGAGGAAACGTCAGTTGAGAAGCATAAGGATTTGGTTGGGGGATCCGATGCCCAGCAAATACAGTCCAAAGAACTTGAAGTGAATGAGAAGGCAGATGCTGGAGGCAATGGCAGTGGTAAAAGGAAGAGAGACGACGCTGAAGAAGTTTCCATGAAAAGGAATAGAAGAAGCTGCAATGCTGAGGTTGAAAGAAATGGTTCGCCGTCAAGTCCTCTGCATTTGCCGTCAGACTATTAA 2127 0.4767 MAHVTQLPCDCDGVCMICKAMPADEEKLTCKTCLTQWHVSCLSNPLATMAEAVQWECPDCSTPPSDIPPMTIGKAVVDGSGDLMAAIRAIEADASLMEREKAKKRQKLLSGKAASEDDEGGLEKAEGQGNDVLDILSGTLNCSFCMLLPERPVTTPCGHNFCLKCFQKWIGQGKLTCAKCRSNIPSKMASQPRINSALVIAIRMAKVSNNIGSGEISKAYHFVHNQDRPEKAYTTERARRNGKANAASGKIFVTVPQDHFGPIPAENDPVRNQGVLVGACWEDRLECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNRRTNRVQSFDQKFDKSNLALEVSCLKGYPVRVVRSHKDKHSSYAPEKGLRYDGVYRIEKCWQKLGLQGFKVCRYLFVRCDNEPAPWTSDCHGDRPRHLPEISEMEKAIGIIERKENPSWDFDEEESCWKWKKPPPRSQRPVKNMNPGEGKRSRRETRKTQNMSIGERLLKEFGCPICNQVMVSPVTTPCAHNFCKSCLEGAFAGQSFVTDRSRGGRSLRSRKNVMKCPSCPTDIADFLQNLQVNTELKGVIESLKAEAEENGDSVEPSEDADGAEEACDDTGSASAGDEEEETSVEKHKDLVGGSDAQQIQSKELEVNEKADAGGNGSGKRKRDDAEEVSMKRNRRSCNAEVERNGSPSSPLHLPSDY 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00108 708 SMART PHD_3 14 61 IPR001965 -
Pral1576g00108 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 207 IPR013083 -
Pral1576g00108 708 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 691 708 - -
Pral1576g00108 708 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Pral1576g00108 708 Coils Coil 87 107 - -
Pral1576g00108 708 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Pral1576g00108 708 Pfam SAD/SRA domain 272 421 IPR003105 -
Pral1576g00108 708 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Pral1576g00108 708 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 107 126 - -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 107 125 - -
Pral1576g00108 708 SMART ring_2 514 570 IPR001841 -
Pral1576g00108 708 SMART ring_2 15 60 IPR001841 -
Pral1576g00108 708 SMART ring_2 142 180 IPR001841 -
Pral1576g00108 708 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Pral1576g00108 708 MobiDBLite consensus disorder prediction 466 502 - -
Pral1576g00108 708 SUPERFAMILY RING/U-box 508 596 - -
Pral1576g00108 708 CDD RING-HC_ORTHRUS_rpt1 140 185 IPR047498 -
Pral1576g00108 708 SUPERFAMILY PUA domain-like 244 441 IPR015947 -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 486 501 - -
Pral1576g00108 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 603 629 - -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 653 690 - -
Pral1576g00108 708 MobiDBLite consensus disorder prediction 597 708 - -
Pral1576g00108 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 606 IPR045134 -
Pral1576g00108 708 SMART G9a_1 265 422 IPR003105 -
Pral1576g00108 708 Gene3D - 241 438 IPR036987 -
Pral1576g00108 708 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Pral1576g00108 708 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 241 436 - -
Pral1576g00108 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 612 IPR013083 -
Pral1576g00108 708 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Pral1576g00108 708 SUPERFAMILY RING/U-box 134 188 - -
Pral1576g00108 708 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 89 209 - -
Pral1576g00108 708 Pfam RING-type zinc-finger 514 568 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00108 Pral-Chr1576 586739 590757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00108 1 605 C2H2 Transcription Factor Family AT5G39550 60.164 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00108 K10638 - qsa:O6P43_017375 978.393