Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00107 ATGGACGTCAAAGGAAGAGGAAGCGCCTCCCCCACTCTCCAAGCCGACGTCGTCGACGACCTCGACCTCAGGCGAGGCCCTTGGACGGTCGATGAGGACCTCACCCTCATCAATTACATCACCACTCACGGCGAAGGTCGCTGGAACTCTCTTGCCCGCTCCGCTGGCCTCAAACGTACTGGCAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGCCCCGATGTTCGACGTGGAAATATCACACTGGAAGAACAGCTTCTGATTCTCGAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCCAGTTTTTGCCGGGAAGAACCGACAACGAGATCAAGAATTACTGGAGAACCCGCGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACTATGCGCTACCTTTGGATGCCAAGGCTGGTTGAGCGCATTCAAGCAGCTGCCGCCACGGCTGCCACCGCCACGACAACGGCAAGTTCTCAGACGTTATCTGCCGCCACAACCGGCACCACAAACTCCACATACAATCCTTATTATAATAACAACATGGAAGTTGAGAATGGGAACATGCTCATGAACCCGGCCCCCATCATGAATAATAATGACTTTGGAGGCTCACAGGTCACTCAGAGCTACACGCCGGAAAACAGCAGCACAGGTGCTTCATCGGACTCGTTCGGAACACAGGTTTCGCCTGTGTCGGAGTTGACTGATATTTACAGTACCGTCCCTAATCAGGATTACTACCAACCCTCTCAGATCAGCTACTCTGATTGCATCACCAGCCCATCCGGGTTATACCCTCAAGGATTGGATTATACCCAGGTGATGGAGCCGAGCAACCCGTGGATTCAGGGCGGGGACACGTTAGACAATTTGTGGAATGTTGAGAATATGATGTTTTTACAGCAGCAGCTCAACAGTGACAGCATGTAA 969 0.5181 MDVKGRGSASPTLQADVVDDLDLRRGPWTVDEDLTLINYITTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQFLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAATAATATTTASSQTLSAATTGTTNSTYNPYYNNNMEVENGNMLMNPAPIMNNNDFGGSQVTQSYTPENSSTGASSDSFGTQVSPVSELTDIYSTVPNQDYYQPSQISYSDCITSPSGLYPQGLDYTQVMEPSNPWIQGGDTLDNLWNVENMMFLQQQLNSDSM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00107 322 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pral1576g00107 322 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 204 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral1576g00107 322 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Pral1576g00107 322 MobiDBLite consensus disorder prediction 216 239 - -
Pral1576g00107 322 CDD SANT 98 121 IPR001005 -
Pral1576g00107 322 Gene3D - 82 145 - -
Pral1576g00107 322 CDD SANT 27 72 IPR001005 -
Pral1576g00107 322 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Pral1576g00107 322 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Pral1576g00107 322 FunFam Myb transcription factor 25 77 - -
Pral1576g00107 322 SMART sant 77 125 IPR001005 -
Pral1576g00107 322 SMART sant 24 74 IPR001005 -
Pral1576g00107 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Pral1576g00107 322 Gene3D - 25 77 - -
Pral1576g00107 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Pral1576g00107 322 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Pral1576g00107 322 FunFam MYB transcription factor 82 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00107 Pral-Chr1576 571066 573116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00107 1 313 MYB Transcription Factor Family AT3G06490 54.790 1.05e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1576g00107 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00107 K09422 - gmx:100791349 421.779