Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00092 ATGGCGACACCGATGGCGGGGCTGCAGCATTTGGAAGGAGGAGGAGGAGTGGCCGTGCTTTCCAATTCTGCCAACAAGGTCGATTCCTCCTCGCCGTCTACTGCGGCCTCCAATGGTGTCTTGGTCTATTCTGAATTGGAGTCCCCAATCTTGATTTTCTTATTCTTTCATAAGGCCATTCGAAATGAGCTTGATGCTCTTCACCGGTTAGCTATGGCATTTGCAACGGGCAACTGCTCCGATATTCAGCCCCTCTTCGAGCGCTATCATTTCGTTAGATCCATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCTGCTCTCGATATACGTGTGAAGAATGTGGCCCAGACATATTCTCTTGAACACAAGGGTGAAAGCAATCTCTTTGATCATCTATTTGAGCTGCTAAATTCTAATATCCAAAATGATGAAAGTTTTTCAAAGGAGTTAGCGTCTTGCACGGGAGCTTTGCAGACATCAGTTAATCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCATTGCTTATTGAGAAATTCTCAATAGACGAACAGGCATCTCTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTCAATACAATGACAGAATTTCTTCCTTGGCTCTCAACATCTATATCATCGGATGAATCTATTGATCTGCAGAAGTGCTTAAGCAAGATAGTACCAGGAGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGTAGAAGTGGTGTTAACACAGTTGAAAGTTGTGCACATCATTCTCATGTTCGCTGCAGTCCTAGCCCATTAACCCATCTGATAGGGACGGCAAGCTGTGCTTGTGAGCCTGCAACAACTGGGAAAAGGAAACATCCTGAATCTATTCTAGATGGTTCTGATGCCACTGGAACACATCCTATTGATGAAATTTTGCTATGGCATAATGCGATAAAAAGAGAGTTGAGTGAGATAGTGGTGGAGACCAGAAAGATACAACTTTCTGGAAATTTTACTAATTTGTCAGCTTTTAACGAGAGATTACAGTTTATTGCTGAAGTTTGCATATTTCATAGTATTGCTGAGGACAAGGTTATATTTCCTGCTGTAGATGGCGAACTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGAGTTCCGGCGTTTGATTGAAGGCATTCAGAGTGAAGGAGCAACATCCAATTCAGAAGCTGAATTTTATCCCAAGTTATGCTCATATGCTGATCATATAGTGGAAACCATACAGAGGCATTTCCGCAATGAAGAAGTTCAGGTTCTTCCACTGGCTCGGAAGCACTTCAGCTTCAAAAAACAACGTGAACTTTTGTACCAAAGCTTGTGTATGATGCCTCTGAAATTGATTGAAGGTGTCCTGCCTTGGTTGGTAGGATCATTAACCGAAGATGAAACAAAGATGTTTCTTAAAAACATGCAACTGGCAGCTCCTCCAACAGATTCTGCTTTAGTCACACTCTTCTGTGGTTGGGTTTGCAAGGCTCGTAAGGAGGGTCTGTGCTTGTTCTCAAGTGTACCAAGTTTCTTTCCTGCTAGAAATCTTGGTGGTACTGAAAACAACAGATTCCAGTCATCTTGTGCTTGTGCTTCTGCGCTTTCTTCTAATGGTTGCCCAGTATCAGCTGAATCAGATGAGAACAAAAAACTGGTCAAGCAAAACATGTTGGAGTTCTGCAAGAATGGGGATGTCCCTCAAACTTCGGAAACTGAAAGTATCCAAAAGCAATGTTGTAGTGCTCAGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCGGTAATAATTTGGGGCTCAGTTCTCATTCCTCTACCAAGTCGTTACGCTCCTTGTCTTTCAGCTCTTCTCCCCCATCTCTTAATTCCAGTCTTTTCATAACAGATAACCCCTCTTGTGATGCTAGTTCTGCAGAGAGACCGATTGATACTATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTAGTGATGGTGATGAGACAATTCTTCGTCAATTTACTGGAAGATTTCGCCTTTTATGGGGTTTACATAGAGCTCACAGTAATGCTGAAGATGACATAGTCTTTCCAGCACTGGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCATACACGCTGGATCATAGGCAGGAGGAAAAATTATTCGAAGATATATCCTGTGTTCTTTCTGAGCTTTCTGTTCTTCGTGAAAGTCCGCAGAGATTCAATATGTCAGAGGACACTAGCCATTTTGAAACTTCTGATGCCACTGTGAGTGATAATATAGTAAACTATAATGAGTTAGCAACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTCACCTTGCATCAGCATATTTTCAGAGAAGAGCGTGAGCTTTGGCCATTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGCCGGATAATTGGAACTACTGGTGCTGAAGTACTCCAGTCGATGTTACCATGGGTAACTTCTGCACTGACTCAGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCTACTAAGAACACCATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCATTGCCTATCCCACTGACGGAAGCATCAGAGCATAGCACGTCCCAAAGAGGTACTGAATATCAAGAAAGCGTGGACCTGAATGATCAGATCTTTAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAAAGTGAGCTTGAGGCAGAGATACGGAAGGTTTATCGGGATTCTTCTCTGGACCCAAGGAGAAAGGCATATCTTGTGCAAAATCTAATGACGAGTCGCTGGATTGCTTCCCAGCAGAAGTTACCCAAAGGTGTTCCTGGAGAATCTTCTAATGGTGAAGAAATAGAAGGAAGATCACCATCATTTCGGGAGCCGGAGAAAAAAGAATTTGGATGTGAGCATTATAATAGAAACTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTATTTACATGCAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAGGTAACATCAGAAATGATGTGTATGCGCTGCTTGAATATACAAGCAGTTGGCCCCATATGCATGACCCCTTCGTGTGATGGACTTTCAATGGCAAAATATTATTGCAACATCTGCAAATTTTTCGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATGTATGCCGTGTTGGGAAAGGGCTTGGAATTGATTATTTTCATTGTATGAAATGCAATTGTTGTCTGGGGATTAAATCAGCATCTCACAAATGCTTGGAAAAAAGCTTGGAAATGAACTGTCCAATTTGTTGCGACTTCTTATTCACATCCAGTGCTACAGTCAGAGCTCTGCCTTGTGGCCATTATATGCATTCAACTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCGATTTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTCGACGCTTTGTTGGCTGCTGAGGCGCTTCCTGGAGAGTACAAGGACCGACATCAGGATATACTGTGCAATGATTGTGATCGAAAGGGCTCTTCACGCTTCCACTGGTTATATCACAAATGTGGTTGTTGTGGCTCATACAATACCCGTGTGATCAAGTCCGAGGCAATAAATTCCATCTGCGACTAG 3732 0.4218 MATPMAGLQHLEGGGGVAVLSNSANKVDSSSPSTAASNGVLVYSELESPILIFLFFHKAIRNELDALHRLAMAFATGNCSDIQPLFERYHFVRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNIQNDESFSKELASCTGALQTSVNQHMAKEEEQVFPLLIEKFSIDEQASLVWQFLCSIPVNTMTEFLPWLSTSISSDESIDLQKCLSKIVPGEKLLQKVIFTWMEGRSGVNTVESCAHHSHVRCSPSPLTHLIGTASCACEPATTGKRKHPESILDGSDATGTHPIDEILLWHNAIKRELSEIVVETRKIQLSGNFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNEFRRLIEGIQSEGATSNSEAEFYPKLCSYADHIVETIQRHFRNEEVQVLPLARKHFSFKKQRELLYQSLCMMPLKLIEGVLPWLVGSLTEDETKMFLKNMQLAAPPTDSALVTLFCGWVCKARKEGLCLFSSVPSFFPARNLGGTENNRFQSSCACASALSSNGCPVSAESDENKKLVKQNMLEFCKNGDVPQTSETESIQKQCCSAQSCCVPGLGVSGNNLGLSSHSSTKSLRSLSFSSSPPSLNSSLFITDNPSCDASSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFTGRFRLLWGLHRAHSNAEDDIVFPALESKEALHNVSHSYTLDHRQEEKLFEDISCVLSELSVLRESPQRFNMSEDTSHFETSDATVSDNIVNYNELATKLQGMCKSIRVTLHQHIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPLPIPLTEASEHSTSQRGTEYQESVDLNDQIFKPGWKDIFRMNQSELEAEIRKVYRDSSLDPRRKAYLVQNLMTSRWIASQQKLPKGVPGESSNGEEIEGRSPSFREPEKKEFGCEHYNRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKVTSEMMCMRCLNIQAVGPICMTPSCDGLSMAKYYCNICKFFDDERNVYHCPFCNVCRVGKGLGIDYFHCMKCNCCLGIKSASHKCLEKSLEMNCPICCDFLFTSSATVRALPCGHYMHSTCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEALPGEYKDRHQDILCNDCDRKGSSRFHWLYHKCGCCGSYNTRVIKSEAINSICD 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00092 1243 Gene3D - 1198 1240 - -
Pral1576g00092 1243 Gene3D nmb1532 protein domain like 47 198 - -
Pral1576g00092 1243 Gene3D nmb1532 protein domain like 309 456 - -
Pral1576g00092 1243 CDD Hr-like 309 438 - -
Pral1576g00092 1243 ProSiteProfiles Zinc finger RING-type profile. 1127 1169 IPR001841 -
Pral1576g00092 1243 Pfam CHY zinc finger 998 1073 IPR008913 GO:0008270
Pral1576g00092 1243 Pfam Zinc-ribbon 1174 1231 IPR039512 -
Pral1576g00092 1243 SUPERFAMILY CHY zinc finger-like 992 1054 IPR037274 GO:0008270
Pral1576g00092 1243 CDD Hr-like 655 813 - -
Pral1576g00092 1243 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 696 1236 - -
Pral1576g00092 1243 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Pral1576g00092 1243 Pfam Hemerythrin HHE cation binding domain 54 180 IPR012312 -
Pral1576g00092 1243 Pfam Hemerythrin HHE cation binding domain 653 814 IPR012312 -
Pral1576g00092 1243 SMART ring_2 1127 1168 IPR001841 -
Pral1576g00092 1243 SUPERFAMILY RING/U-box 1124 1179 - -
Pral1576g00092 1243 Gene3D nmb1532 protein domain like 647 886 - -
Pral1576g00092 1243 ProSiteProfiles Zinc finger CHY-type profile. 991 1060 IPR008913 GO:0008270
Pral1576g00092 1243 ProSiteProfiles Zinc finger CTCHY-type profile. 1063 1126 IPR017921 -
Pral1576g00092 1243 FunFam Zinc finger protein BRUTUS 648 878 - -
Pral1576g00092 1243 Pfam Ring finger domain 1126 1168 IPR001841 -
Pral1576g00092 1243 CDD RING-H2_Pirh2-like 1126 1169 - -
Pral1576g00092 1243 MobiDBLite consensus disorder prediction 966 991 - -
Pral1576g00092 1243 CDD Hr-like 52 178 - -
Pral1576g00092 1243 SUPERFAMILY Zinc hairpin stack 1064 1120 IPR037275 -
Pral1576g00092 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1120 1171 IPR013083 -
Pral1576g00092 1243 FunFam Zinc finger protein-related isoform 1 1122 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00092 Pral-Chr1576 475390 484004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00092 1 1242 C2H2 Transcription Factor Family AT3G18290 66.242 0.0 1652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00092 K16276 - gmx:100791354 2027.68