Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00088 ATGGCCATGGACGTCCAATTGCACTCTTATTATGCTTTCTTCCTTCCCTGCTTAATATTTGCCTGCTTCTTCTTCTCAGCAGAATCACACAGGCACGGCAAAGTTACTGCTTGCTCTGCGTGTAATCAAACTTACAATTGTGGAAATATTAGCAACATCGCTTACCCTTTCTGGGGACAGAATCGACTCCCTTGCTGTGGCGGCAGCAGTCAATTCAAGCTCACTTGCCGACATAAGACCACTTTCATCACAGTAGGCCAACAGAATTTCACGGTGGTTTCCATTAACCCAGAGTTTTACACTATGAAACTGGTCCAGACTGCTCTCTCAGTTGCCTGTCCTTGGCATTTCACCAACACTTCCCTGGATCCTTCTCTCTTCCGCTTCGACAACTTGACGATTCAGAACCTGACCGTATTCTACAAGTGCCCTTCTCATGTTTCAAGCCCAAGCAACATCACTTGCCATCCTGGTGAAAAGGTTGCTTTTTTCGCCAAGCAAGACGAGGCGCAGAAACTGCAAAAATTTTCCGGATGCAAGGCTCGTAATGAAATTCTAGTTCAAGGTGAGATTTCCGACGTTGAAGGCCAGGACGGGCTGAACAAATCTTTAAGGAATGGGTTCGTTGTTCAGTATGTTGCCGACTGGGTTCGCTGCTCGGCATGCAATTCTTCGGGAGGAATATGTGGGACTTACGGCCATGATCCTCCTCGATTTGCCTGTCATTGCCGGAACGGAATTCATCCCTATACCTGTCCAAGAGGAAGACATTTGAACTGGAAAGGGAAACTCATAGCAGGTGCTGCTGCTTCTTCGTTCAGCGTGGTAGTTATGAGCATCGTCTTTTATTTCTATCTGCGCCGAAAGAAGAATCGTCATGGCAAATCAGACAAACAATCTCAGAGTCGGACCATATCTTCCGATTCCTCTTTAAAGGGCGCTGAGAAAGGAAGTAAATACTTTGGAGTCCACCTCTTCACATATAGCGAACTTGAAGAGGCCACTAACAACTTTGATTCAGCCAATGAACTTGGAGATGGGGGTTTTGGAACAGTTTATTGTGGAAAACTAGGGGATGGTCGTACAGTTGCAGTGAAGAGACTGTATGAAAACAATGACAGGAGAGTTGAGCAGTTCATGAATGAAGTGGAGATCTTAACTCGTCTGCGCCACCAAAACCTCGTCCAACTTTATGGCTGCACTTCTCGCCATAGCCGTGAACTTCTGCTTGTGTATGAATACGTTCCTAATGGAACTGTTGCCGATCATCTTCATGGCGAAAGGGCAAAACCAGCAGACACACTTCCGTGGCATACCAGAATGAACATAGCCATAGAGACTGCAAGCGCATTGGCATATCTTCACGCATCTGACATCATCCATCGTGATATAAAAACCACCAACATCCTTCTCGACAGTCATTTCGTTGTCAAAGTAGCAGATTTTGGACTGTCTCGTCTCTTCCCGAATGATGTTACTCACATTTCAACGGCGCCGCAGGGAACTCCTGGATACGTGGATCCGGAGTACCACCAATGCTACCAGCTTACTGATAAGAGTGATGTGTATAGCTTTGGAGTGGTGCTCATTGAGTTGATATCATCAATGCCTGCTATTGATATCACGAGGCATAGGCATGAGGTCAATTTGGCAATCATGGCTGTTCACAAGATTCAAAACGGGGATTTGCATGAGCTTGTGGACCCAGCTCTTGGGTTTGAAGCAGATCCCAAGGTGAGGAAGATGGTTAATGGAGTGGCAGAGTTGGCTTTCCAGTGCTTGCAGAGTATGAAAGATACGAGGCCTTCCATGGAAGAGGTGGTGGAGAGGTTGAAGGAAATACAGAGTGATGGGGTAGGCAAGACCAAAGAAGAGGCGGCGATGGATATCTCAGCAGATCATGTCATGTTGCTGAGGCATGAAGCGCCTCCACTATCACCTGATTCAAATATGAGGAGCACAGGGACGACTCCAAATGCCAGCGGATAA 1989 0.4671 MAMDVQLHSYYAFFLPCLIFACFFFSAESHRHGKVTACSACNQTYNCGNISNIAYPFWGQNRLPCCGGSSQFKLTCRHKTTFITVGQQNFTVVSINPEFYTMKLVQTALSVACPWHFTNTSLDPSLFRFDNLTIQNLTVFYKCPSHVSSPSNITCHPGEKVAFFAKQDEAQKLQKFSGCKARNEILVQGEISDVEGQDGLNKSLRNGFVVQYVADWVRCSACNSSGGICGTYGHDPPRFACHCRNGIHPYTCPRGRHLNWKGKLIAGAAASSFSVVVMSIVFYFYLRRKKNRHGKSDKQSQSRTISSDSSLKGAEKGSKYFGVHLFTYSELEEATNNFDSANELGDGGFGTVYCGKLGDGRTVAVKRLYENNDRRVEQFMNEVEILTRLRHQNLVQLYGCTSRHSRELLLVYEYVPNGTVADHLHGERAKPADTLPWHTRMNIAIETASALAYLHASDIIHRDIKTTNILLDSHFVVKVADFGLSRLFPNDVTHISTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSMPAIDITRHRHEVNLAIMAVHKIQNGDLHELVDPALGFEADPKVRKMVNGVAELAFQCLQSMKDTRPSMEEVVERLKEIQSDGVGKTKEEAAMDISADHVMLLRHEAPPLSPDSNMRSTGTTPNASG 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00088 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Pral1576g00088 662 SUPERFAMILY Protein kinase-like (PK-like) 318 611 IPR011009 -
Pral1576g00088 662 Pfam Protein kinase domain 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1576g00088 662 ProSiteProfiles Protein kinase domain profile. 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1576g00088 662 SMART serkin_6 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1576g00088 662 MobiDBLite consensus disorder prediction 647 662 - -
Pral1576g00088 662 MobiDBLite consensus disorder prediction 642 662 - -
Pral1576g00088 662 CDD STKc_IRAK 344 614 - -
Pral1576g00088 662 MobiDBLite consensus disorder prediction 294 313 - -
Pral1576g00088 662 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 310 414 - -
Pral1576g00088 662 Gene3D Transferase(Phosphotransferase) domain 1 415 635 - -
Pral1576g00088 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 659 IPR044652 GO:0004672
Pral1576g00088 662 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Pral1576g00088 662 Pfam Wall-associated receptor kinase C-terminal 167 245 IPR032872 -
Pral1576g00088 662 Gene3D Phosphorylase Kinase; domain 1 311 414 - -
Pral1576g00088 662 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Pral1576g00088 662 FunFam Wall-associated receptor kinase-like 20 415 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00088 Pral-Chr1576 452043 457321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00088 27 662 Receptor kinase-like Gene Family AT1G25390 43.379 2.25e-151 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pral1576g00088 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00088 - - qsa:O6P43_008550 711.835