Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00087 ATGCCGATCTTCCCCTTTATATCTCAGTGTTTTGTCCCCAGTGTAGGTAAAAACGATGCTTCGACTCCTAAGAAAAGTGATGTAGAGGGTAGTCAAATAGTGAGTGTGAATGTCGAGGTAACAAGCGACCGTTGCAGCCCCGTCCAATCGGTGCCCGTGGTTTCTGGAGCACCGATCAGACATGTTCGATCTGAGGTACTGAGCAGGCACGGCAACAGAAGTAAAATATTAAAGTATTCTGAACTTAAAATAGCAGCCAACAATTTTGACTCCGACAGAGAGCTTGGGAGAGGAAAACATGGGACAGTATACCTTGGAATTCTTAAAGACGGGCATTCTGTTGCAATAAAGCAGTTACACGAAGACAAGTTAAAGGCCCTGAGGTTACATGATGAGCAGCTTCACAGCGAGAAAGTTGAAAATTTCATGAGTGAAGTCTCATTGTTAACTTCTGTGAGCCATGAAAACCTTGTCCAACTGCATGGCTGCGTCTCTTCTCAAAGCAGTGAACTACTTCTAGTGCAAGAATACGTGCCGAAAGGAAATCTTACCAAGTGCCTTCTTGATTCCCTGCTGCAACCCGGTGTACTCCCATGGCATACCCGATTAAATATTGCAATACAAACAGCAAGTGCATTGGCTTATCTCCATTCTCGTAATATAATACATCGTGATGTGAAAACCAGCAATATTCTGCTTGACCACAGTTTCAATGCTAAGGTGGCAGACTATGGATTGTCACACCTCTTCCCACTAGGTGTTACCCATATCACAACTGATCCTGATGGGACTCCAGGTTATATCGATCCGGAGTATTATGAGCATTGCCATCTTTCTGATAAGAGTGATGTATATAGCTATGGAGTTGTGCTGATGGAGCTGATATCATCCCTGCCAGCATTTGGTGAGGAGGATGAACGTCCCTGCCTTTCTGATTATGCCGTCAATAAAATCCGGGGTAGGCAACTTGGGAGCCTTGTAGATCCTGCTCTTGGATTTGAATCAGACGGCTGGATAACTCAAACGATTAGTGCAGTGGCAGACTTGGCATGTAGCTGTTTGCAACGCCACAGAGACAGCAGACCTTCCATGGCTAAAGTTTTGGAGAGGCTCAAGGGCATTCAAAGTACGAGAAACTGCTAG 1143 0.4506 MPIFPFISQCFVPSVGKNDASTPKKSDVEGSQIVSVNVEVTSDRCSPVQSVPVVSGAPIRHVRSEVLSRHGNRSKILKYSELKIAANNFDSDRELGRGKHGTVYLGILKDGHSVAIKQLHEDKLKALRLHDEQLHSEKVENFMSEVSLLTSVSHENLVQLHGCVSSQSSELLLVQEYVPKGNLTKCLLDSLLQPGVLPWHTRLNIAIQTASALAYLHSRNIIHRDVKTSNILLDHSFNAKVADYGLSHLFPLGVTHITTDPDGTPGYIDPEYYEHCHLSDKSDVYSYGVVLMELISSLPAFGEEDERPCLSDYAVNKIRGRQLGSLVDPALGFESDGWITQTISAVADLACSCLQRHRDSRPSMAKVLERLKGIQSTRNC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00087 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Pral1576g00087 380 Gene3D Phosphorylase Kinase; domain 1 61 177 - -
Pral1576g00087 380 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1576g00087 380 Pfam Protein kinase domain 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1576g00087 380 SUPERFAMILY Protein kinase-like (PK-like) 70 371 IPR011009 -
Pral1576g00087 380 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Pral1576g00087 380 SMART serkin_6 89 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1576g00087 380 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 74 377 IPR044652 GO:0004672
Pral1576g00087 380 Gene3D Transferase(Phosphotransferase) domain 1 178 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00087 Pral-Chr1576 445722 449165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00087 76 376 Receptor kinase-like Gene Family AT1G25390 48.860 3.16e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pral1576g00087 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00087 - - tpra:123887372 413.69