Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00084 ATGCCTGATGCAACAGCGGCTTCAGAATCACAGCACATCAAATGCCCAAGGCCCAGGACCCAATTCGCACATCTCATTTCCCTGACAGATCCCAACCAACAAACCCCTTCCCTGCGCCAATCCACTCGCTGCAAACCCACCATTTCCTCTATCCTCTCTGCCTCCTCCCACGACACTTCCGGTGAAACCGCACCACCCAGCCTTAACGCCAATAAGAAGAAGACCAATTTCTCCGCGGCAGCCTTGAGAGGATTCGGATGCACTGCGGGAGCCTCGCGGCAGGTATCGCTGCCGGCGGTCATTCGGACATCGGCTGATTGGCAACAAACCAAAGCCAGAAAAAAGAAGCACAAGAGGAATGGTGCCAACAACAGTATGAGCGGTCAAGGCGTTCTTGATGGTTCAAATCCTGGTTCCATTAGTTGTGCTGATCTTCAAGATGCTTGGTGTGGCCCTGGAATTGGGTTTTCGGCGGATGTTGCGTCCCCTGCGGATTGTGTTGTCGCCAGGAAGAATGGCCCTACCAGAGGGAGCCACAGGGAGCCATTCACGGGTCGCCCTCGGTCTTCTGGGACTGCTGGATCCTATCGCCATGTTCCACTTCCTCCCTCCCATAACTTTGCTGGGATGATGCTGCTACAAGGAAATCTGCTAATGGGGGGAAGATTGAATTCTCGCGACCACTATAGAGACTGGAGACTTGATGTTGATAACATGTCTTATGAGCAATTGCTGGAGCTTGGTGAAAGAATTGGTTATGTAAACACTGGACTTAAAGAAGATGAGGTAGGACGTTACATCAGGAAATATAAGCTTTCCAAGTTCAATGAGACATCAAAACGTCAACTTGGCAACAGGTGCAGCATTTGTCAGGAAGAATACGAAGCCGATGATGAGGTGGGAAGGCTAAGTTGTGAACACGACTATCACTTTCAGTGTTTAAAGCAATGGCTCGCACAGAAGAATTGCTGCCCAGTGTGTAAGCAAGAAGTTGCTCGTCGTCACTCCGTGGCCAAGTCCTGA 1023 0.5073 MPDATAASESQHIKCPRPRTQFAHLISLTDPNQQTPSLRQSTRCKPTISSILSASSHDTSGETAPPSLNANKKKTNFSAAALRGFGCTAGASRQVSLPAVIRTSADWQQTKARKKKHKRNGANNSMSGQGVLDGSNPGSISCADLQDAWCGPGIGFSADVASPADCVVARKNGPTRGSHREPFTGRPRSSGTAGSYRHVPLPPSHNFAGMMLLQGNLLMGGRLNSRDHYRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEVGRYIRKYKLSKFNETSKRQLGNRCSICQEEYEADDEVGRLSCEHDYHFQCLKQWLAQKNCCPVCKQEVARRHSVAKS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00084 340 Pfam Ring finger domain 286 328 IPR001841 -
Pral1576g00084 340 MobiDBLite consensus disorder prediction 171 199 - -
Pral1576g00084 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 45 331 IPR045191 GO:0061630
Pral1576g00084 340 FunFam E3 ubiquitin-protein ligase rnf12-A 254 333 - -
Pral1576g00084 340 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Pral1576g00084 340 SUPERFAMILY RING/U-box 286 333 - -
Pral1576g00084 340 SMART ring_2 287 327 IPR001841 -
Pral1576g00084 340 MobiDBLite consensus disorder prediction 52 71 - -
Pral1576g00084 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 337 IPR013083 -
Pral1576g00084 340 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00084 Pral-Chr1576 431203 434408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00084 72 242 C3H Transcription Factor Family AT1G73760 37.500 1.13e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00084 - - pcin:129320004 514.227