Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00083 ATGCCTGATGCAACAGCGGCTTCAGAATCACAGCACATCAAATGCCCAAGGCCCAGGACCCAATTCGCACATCTCATTTCCCTGACAGATCCCAACCAACAAACCCCTTCCCTGCGCCAATCCACTCGCTGCAAACCCACCATTTCCTCTATCCTCTCTGCCTCCTCCCACGACACTTCCGGTGAAACCGCACCACCCAGCCTTAACGCCAATAAGAAGAAGACCAATTTCTCCGCGGCAGCCTTGAGAGGATTCGGATGCACTGCGGGAGCCTCGCGGCAGGTATCGCTGCCGGCGGTCATTCGGACATCGGCTGATTGGCAACAAACCAAAGCCAGAAAAAAGAAGCACAAGAGGAATGGTGCCAACAACAGTATGAGCGGTCAAGGCGTTCTTGATGGTTCAAATCCTGGTTCCATTAGTTGTGCTGATCTTCAAGATGCTTGGTGTGGCCCTGGAATTGGGTTTTCGGCGGATGTTGCGTCCCCTGCGGATTGTGTTGTCGCCAGGAAGAATGGCCCTACCAGAGGGAGCCACAGGGAGATGATGCTGCTACAAGGAAATCTGCTAATGGGGGGAAGATTGAATTCTCGCGACCACTATAGAGACTGGAGACTTGATGTTGATAACATGTCTTATGAGCAATTGCTGGAGCTTGGTGAAAGAATTGGTTATGTAAACACTGGACTTAAAGAAGATGAGGTAGGACGTTACATCAGGAAATATAAGCTTTCCAAGTTCAATGAGACATCAAAACGTCAACTTGGCAACAGGTGCAGCATTTGTCAGGAAGAATACGAAGCCGATGATGAGGTGGGAAGGCTAAGTTGTGAACACGACTATCACTTTCAGTGTTTAAAGCAATGGCTCGCACAGAAGAATTGCTGCCCAGTGTGTAAGCAAGAAGTTGCTCGTCGTCACTCCGTGGCCAAGTCCTGA 939 0.5005 MPDATAASESQHIKCPRPRTQFAHLISLTDPNQQTPSLRQSTRCKPTISSILSASSHDTSGETAPPSLNANKKKTNFSAAALRGFGCTAGASRQVSLPAVIRTSADWQQTKARKKKHKRNGANNSMSGQGVLDGSNPGSISCADLQDAWCGPGIGFSADVASPADCVVARKNGPTRGSHREMMLLQGNLLMGGRLNSRDHYRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEVGRYIRKYKLSKFNETSKRQLGNRCSICQEEYEADDEVGRLSCEHDYHFQCLKQWLAQKNCCPVCKQEVARRHSVAKS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00083 312 FunFam E3 ubiquitin-protein ligase rnf12-A 226 305 - -
Pral1576g00083 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 309 IPR013083 -
Pral1576g00083 312 SMART ring_2 259 299 IPR001841 -
Pral1576g00083 312 SUPERFAMILY RING/U-box 258 305 - -
Pral1576g00083 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 303 IPR045191 GO:0061630
Pral1576g00083 312 Pfam Ring finger domain 258 300 IPR001841 -
Pral1576g00083 312 MobiDBLite consensus disorder prediction 52 71 - -
Pral1576g00083 312 ProSiteProfiles Zinc finger RING-type profile. 259 300 IPR001841 -
Pral1576g00083 312 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00083 Pral-Chr1576 431203 434412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00083 189 305 C3H Transcription Factor Family AT2G15530 45.378 5.16e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00083 - - pcin:129320004 526.554