Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00062 ATGAGCCCAACCTTATTTTTTGGTGCATCTATGCAGGCGGCAACGGAGGAAGATAGGAAGAGGAAACGAAGTGCTAATCGCGATTTGGCAATGGCTAAGCTCAAAGAGGGGAACGTCAACGCAGCCTCAGAGTTATTTCAGAGAGCACTGAACGTCACTCCCATTATGGCTCATCAACTGATTCAGGTTTTGAGATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCTTACATGTCCAAGATTAAAAGGGAAAATGGTGGTGTTGTAGCAGTGATCACTGAGGATAGTGATCTAATTGCCTACGGTTGTCCAGCTATTGTCTTTAAGATGGACCGTTACGGGAATGGCGAAAGCATAGAGTTAGACAAGGTTTTCAAAGCTGAGGCTTGTAAACCATCCTTCCGAAATTTTGATATGGAACTCTTCACAGGTATGTCTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATAGTGCGAGCTCATGCCTTGGTTTCCAAGTATCGCAATTTAGATCGCGTGTTATCTGTTCTTAAGATGGAGAAGGGAAATCAAGTGCCAGGAGATTACGCCAAATCCTTCAAAGAGGCAATTGCAGTCTTCCGGCATGCTCGAATATATGATCCCAATGCTAAGGAGCTCAAGCACCTAGCGCCACTTCCGCAAAACCTACTTCAGTCCTTTGATGGAAATCTTGATTTTTTGGGACCAGAAATTCCTCGAGCAACGGTTACCGCAATAGCAGAAGGCAACTTAAATCCCTCAACTAAGAAAGTCTTTGATAAGCTGGAAAGTTCTGCACTCCCCGTGGACCCCATTGTTCTCAAGAGCAATCGTCAATACCGGAGAGTCGAAGTTTTTGCAACCCCTGCACATGAGCGCTCCTTGAAAGTCTTTGACTCCCTTAATGCCAGAGAAAACAACACAGTGACGTCGTCGAATCTGGTCGTGAACAAGGACAAGTATTCTGGTGAAGCATTGCCACTTCAGAAACTTATTAGACCGTTGGTAACTTGTGGATCTGCAGAGAAGGAAAATATTCCCGATAAAACTCCGTTAAGGGTTCCTGACAACAACCCATTCAGGATAAAACCTGAGGAAATTTGTTTATTTCAGAGGGAGAACCCCGATGAACAAGTTCTTGTTACCAGGAGTGCTGAATACATGGACGTGTGCATGAATCCTGATAGCTTTCCTGAAGAGACGTCTGAAAACCTCTCGAGAAAAAGGAATTTTGAGACCATTTGCTCGGATGAAGCAGAAACTTGCGACGACCAAATTTCAGAGGTGACGGTGGTTGAAGCGGAAGATCCGGACATGTTATGTTGGAACGTGATATCCCAAGAAAGTGTAGATTCTAAGACAGTAAAATGCGCTGACTTGAAAAGAAGAGGTGCAAGTGAGAAAAAATTCAAGAAAAGCGTTGGCAAGAAAGCGGGGGGCAAGAACAGCAGTATCTTGAATTTCTTTTCTCGAGTGTAA 1515 0.4409 MSPTLFFGASMQAATEEDRKRKRSANRDLAMAKLKEGNVNAASELFQRALNVTPIMAHQLIQVLRSENIEFVVAPYEADAQLAYMSKIKRENGGVVAVITEDSDLIAYGCPAIVFKMDRYGNGESIELDKVFKAEACKPSFRNFDMELFTGMSVLAGCDFLPSVPGIGIVRAHALVSKYRNLDRVLSVLKMEKGNQVPGDYAKSFKEAIAVFRHARIYDPNAKELKHLAPLPQNLLQSFDGNLDFLGPEIPRATVTAIAEGNLNPSTKKVFDKLESSALPVDPIVLKSNRQYRRVEVFATPAHERSLKVFDSLNARENNTVTSSNLVVNKDKYSGEALPLQKLIRPLVTCGSAEKENIPDKTPLRVPDNNPFRIKPEEICLFQRENPDEQVLVTRSAEYMDVCMNPDSFPEETSENLSRKRNFETICSDEAETCDDQISEVTVVEAEDPDMLCWNVISQESVDSKTVKCADLKRRGASEKKFKKSVGKKAGGKNSSILNFFSRV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00062 504 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 11 346 IPR006084 -
Pral1576g00062 504 Pfam XPG I-region 68 159 IPR006086 GO:0004518
Pral1576g00062 504 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 64 81 IPR006084 -
Pral1576g00062 504 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 164 IPR006084 -
Pral1576g00062 504 SMART HhH_4 146 179 IPR008918 GO:0003677|GO:0003824
Pral1576g00062 504 FunFam exonuclease 1 142 215 - -
Pral1576g00062 504 ProSiteProfiles TPR repeat profile. 23 56 IPR019734 GO:0005515
Pral1576g00062 504 ProSitePatterns XPG protein signature 2. 68 82 IPR019974 GO:0016788
Pral1576g00062 504 SUPERFAMILY PIN domain-like 11 159 IPR029060 -
Pral1576g00062 504 Gene3D - 8 137 - -
Pral1576g00062 504 CDD H3TH_FEN1-like 147 219 - -
Pral1576g00062 504 Gene3D - 142 215 - -
Pral1576g00062 504 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 144 273 IPR036279 -
Pral1576g00062 504 SMART xpgineu 65 137 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00062 Pral-Chr1576 332662 336917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00062 19 237 Core DNA Replication Machinery Family AT5G26680 27.477 1.22e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00062 K10746 - gmx:100817932 579.326